Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00473 ATGGGATACATTTTCACACGTGCTCCTATTGACCCGAGTATGAAGCGTGTGCGCTGCCCCCTTTATAAAACCTTCCCAACAACATCGTTTTTCTCATCTCCCAACTTCACAACCTTAATCTCTTCTCTTCAATCTCCACCCTCTCCTCCGCTTTTCGAATTTTCCATTCAAGGCCTCTATAAACGAAGGAAACTGAAGATGATGGAAATCGCGTCCACCAATTACTTGCCTGAACTTGAAATGGAGTATCCAATCTTTCTTGATCAGTACCAGATGGATTCTTTTGCATGCCCACTGGATGACTTTGACTTCGAGTCTTTCTCCGGATCCCCTGAGAGCAATTCATCTTATCGGCTAAACTCCGAAACCACTCTAAATTGTTTCCCAGCTCAAAGTTCTGATCAGTCATTTACCCCTCCAAGACCAACCAAGAGGCTCAAGAACACATTCAATACCTTCAAAACTTGTGCGGGTGACTCAATTCCCCACAATGTTTCCGCTTCTCCTTCCTCCCAATTCATTTCTTTTGGCCACTTTAATGCTTCACCACGTGCTTCCCAGCAATTTCACAACTTCCATGTGAAGCCTAAAAGCGAAAACCCGTCCAGTGAGCACATGGACTTTACAGACTTCGTTTCTCAAGGTTCATATCAGGACAAAACTTTTTTCAGTTCTGATAATCGAACGAACCAGGTTGGCTTAACCACTAGGAACCCTATCCAAGCCCAAGAGCACGTAATAGCTGAAAGAAAACGAAGGGAAAAGCTCAGCCAGAGGTTCATCGCTCTTTCTGCCGTCCTTCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTATCAAGTATGTGAAACAACTACGAGAGCGCGTGAAAAATCTAGAGGAGAAATCAGCGAAGACCACAACTGGTTCTTCAGTCCTGGTGAAAAGATCTATTCTCTTTGCTGACGGTGAAAATTCTGACAGCCACTGCGCCAATTCACTCCCTGAAATCGAAGTAAGAGTTTCTGGGAAAGACGTGCTCATCAGAACTCAGAGCGATAAACACAGTGGGCGTGCGGCAGTGATACTCAGTGAATTAGAAAAGCTTCAGTTCATTGTCCAGAGTAGCAGCCTTTTGCCCTTCGGCAATAACAATATTGACGTAACTATTATTGCTCAGATGAAGGAAAACTACATGGCAGCAAAGGATCTCCTGGGAAGGTTACGAAAGGCTTTGAAGCAAGTTGATGGAGCCTAA 1248 0.4479 MGYIFTRAPIDPSMKRVRCPLYKTFPTTSFFSSPNFTTLISSLQSPPSPPLFEFSIQGLYKRRKLKMMEIASTNYLPELEMEYPIFLDQYQMDSFACPLDDFDFESFSGSPESNSSYRLNSETTLNCFPAQSSDQSFTPPRPTKRLKNTFNTFKTCAGDSIPHNVSASPSSQFISFGHFNASPRASQQFHNFHVKPKSENPSSEHMDFTDFVSQGSYQDKTFFSSDNRTNQVGLTTRNPIQAQEHVIAERKRREKLSQRFIALSAVLPGLKKMDKASVLGDAIKYVKQLRERVKNLEEKSAKTTTGSSVLVKRSILFADGENSDSHCANSLPEIEVRVSGKDVLIRTQSDKHSGRAAVILSELEKLQFIVQSSSLLPFGNNNIDVTIIAQMKENYMAAKDLLGRLRKALKQVDGA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00473 415 Coils Coil 279 306 - -
Vian10g00473 415 Gene3D - 235 305 IPR036638 GO:0046983
Vian10g00473 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 289 IPR011598 GO:0046983
Vian10g00473 415 SMART finulus 246 295 IPR011598 GO:0046983
Vian10g00473 415 CDD bHLH_AtNAI1_like 242 314 - -
Vian10g00473 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 305 IPR036638 GO:0046983
Vian10g00473 415 PANTHER BHLH TRANSCRIPTION FACTOR 80 409 - -
Vian10g00473 415 Pfam Helix-loop-helix DNA-binding domain 243 290 IPR011598 GO:0046983
Vian10g00473 415 Coils Coil 388 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00473 Vian-Chr10 4358448 4360420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00473 68 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.441 1.76e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian10g00473 HLH 5.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00473 - - var:108334767 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00473 10 4358448 4360420 Vian10g00473 10 4358448 4360420 ECH
Vian10g00473 10 4358448 4360420 Vian1g01534 1 17107445 17109438 PCT