Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00472 ATGAAGGTGAAGAAAGAGGAGCTAAAGGTGAAGAAGGAGATCCTAGGGCTGGTTGGAACCGTTGTGGGGTTGAACAAGAGGTTAGAAAGTGTGAAGGAAGCGTTGAGGAGTGGAAGGTTCGAATTTGCAGCACAAGGGTTGAAGGAGTTGAAAGTGGCGTTGAGGATTGACGAGAAGGATGATAGGGAGCCTTTGGAAACTGAGGATTGCACCATGTTCCGACAATGTCTTGAAGATGATCACGAGTTACTTTCCCTTGAGATAGCAAGTGCCCTAGAGAACTTGCCACTACCACAGCATCAGCAACCTTTGTTTTCGGAGAGTCACATGTTGTATTCCGAAACCACTAATTTCAACAGTTCCATCAATCAGCCCAAAACGAATCTCTGCAGTTGGAACTCAACCCCCATTTCCACCAAACACTTTTCACCCAAACTTTCCTCCTCTTCCTCTTCCTCATCTTCACCACCCTCCCAGATTATGTTTCTAAACAACTCAAACTCGTTGTCTGTGGAGAACACTCAGTTTCAAGGGATTGTTTCTGCTGCGCTGAGCCCGCCGCAACAGAACAAAGGTGTTTCAGTTTCAATCCCAGAGAACGGAACAAGATCATCAAAAAATCTGAAAGACAAAGGAATCCGCAAGACTTCCGGTCACGGTCGGAATCACATCATCGCGGAAAGAAAACGGAGACAGAAAGTGAGCCAGGGCTTAATTGCTCTTGCTGCTCTCATTCCTGGCTTAAAGAAGATGGACAAGGCTTCAGTGCTGGGAGACGCTGTCAGGTATGTGAAAGATCTTCAAGAGCGTCTGAAAAATCTTGAAGGAAAGAACAAGAAGAAGAGAGATGAGAAGTCTGAGGTGGTGATGGTGAAGAAGCCACGGCTGAGCTACCACGATGGTTCAGCTTCAGGCGACGGTGATGGGTGTTTTAGGGAAAGCCTCCCTCGCGTGGAAGCACGAGTGTCAGAGAAGGATGTGCTCCTTCGCATCCACTGCGAAAAGCGAAAAGGTCTTTTGCTGAAAATGCTTGTGGAGATTCAAAACCTTCATCTCTTTGTTGTGAATAGCAGTGTCCTGCGTTTTGGAGATTCCAACCTTGATATCACAATTGTTGCTCAGATGGGGACGGAGTACAACTTGACTATAAATGACCTTGTAAAGAACCTCCGCATGGCTACTTTGAAATCCACGTGA 1197 0.4653 MKVKKEELKVKKEILGLVGTVVGLNKRLESVKEALRSGRFEFAAQGLKELKVALRIDEKDDREPLETEDCTMFRQCLEDDHELLSLEIASALENLPLPQHQQPLFSESHMLYSETTNFNSSINQPKTNLCSWNSTPISTKHFSPKLSSSSSSSSSPPSQIMFLNNSNSLSVENTQFQGIVSAALSPPQQNKGVSVSIPENGTRSSKNLKDKGIRKTSGHGRNHIIAERKRRQKVSQGLIALAALIPGLKKMDKASVLGDAVRYVKDLQERLKNLEGKNKKKRDEKSEVVMVKKPRLSYHDGSASGDGDGCFRESLPRVEARVSEKDVLLRIHCEKRKGLLLKMLVEIQNLHLFVVNSSVLRFGDSNLDITIVAQMGTEYNLTINDLVKNLRMATLKST 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00472 398 PANTHER BHLH TRANSCRIPTION FACTOR 105 396 - -
Vian10g00472 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 221 282 IPR036638 GO:0046983
Vian10g00472 398 Coils Coil 257 284 - -
Vian10g00472 398 MobiDBLite consensus disorder prediction 187 221 - -
Vian10g00472 398 Gene3D - 210 284 IPR036638 GO:0046983
Vian10g00472 398 Coils Coil 74 94 - -
Vian10g00472 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 218 267 IPR011598 GO:0046983
Vian10g00472 398 MobiDBLite consensus disorder prediction 204 221 - -
Vian10g00472 398 Pfam Helix-loop-helix DNA-binding domain 222 268 IPR011598 GO:0046983
Vian10g00472 398 MobiDBLite consensus disorder prediction 187 203 - -
Vian10g00472 398 SMART finulus 224 273 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00472 Vian-Chr10 4341966 4348542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00472 137 393 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.074 3.78e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian10g00472 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00472 - - vun:114174269 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00472 10 4341966 4348542 Vian1g01533 1 17077115 17078497 PCT