Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00469 ATGGCTGCAGAGATTGGCCTAGTCTCCATGACCCAGATCCAAAAATTATCACAATCCCAACACCCCAAAAAACAACAACCTCAACCAAACCCTAACATCACAACCACCACCCCCTCCTCTTGGATGTGGAACCCTAGCCAGCAACTGCACCACCAAGAAGACGACGATGACTCATGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGAACCACATGGCCTCCACGCTCCTACACCTGCACATACTGCAGAAGGGAGTTCCGCTCCGCCCAAGCTCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGTGCACGCCTCAACCAACCCCCTCCTTCCTCCACCGCCATCTCTTCTCTTCCCACTTCTTCACCCTACATCAACATCCCTCCTCAAGACCTTGTTGCAAATGCTGGGTTATGCCTCCTCTACCACTTGCCACCAAGCCCTAGTGCACCACCCTTCTCTAATTCCCCCTCTACCAATACTCTTTCTTCTTCTCCCTCTCCCTCCACTCTTCTCTCTATCTCCTCCTATCCTTCAACCAACTTTCTGATGCAAACTTCCTTTAATTTTCCTGGTGCACCCTCGACTGGGATCAACACTGCCACTGTTTCCTCTTTCTACTCCAGCAAAGTGGAACAATCGGCAACTTCTTCCTCTTTTGCTGCCGGCCACCTCGAAGAGCTTGATCTAGAGCTCCGCCTCGGCCACAAACCAACACAAACCTCATAA 744 0.5228 MAAEIGLVSMTQIQKLSQSQHPKKQQPQPNPNITTTTPSSWMWNPSQQLHHQEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTYCRREFRSAQALGGHMNVHRRDRARLNQPPPSSTAISSLPTSSPYINIPPQDLVANAGLCLLYHLPPSPSAPPFSNSPSTNTLSSSPSPSTLLSISSYPSTNFLMQTSFNFPGAPSTGINTATVSSFYSSKVEQSATSSSFAAGHLEELDLELRLGHKPTQTS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00469 247 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
Vian10g00469 247 MobiDBLite consensus disorder prediction 13 48 - -
Vian10g00469 247 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Vian10g00469 247 SMART c2h2final6 81 103 IPR013087 -
Vian10g00469 247 Gene3D Classic Zinc Finger 72 122 - -
Vian10g00469 247 PANTHER OS07G0101800 PROTEIN 53 243 - -
Vian10g00469 247 Pfam C2H2-type zinc finger 81 105 - -
Vian10g00469 247 MobiDBLite consensus disorder prediction 155 175 - -
Vian10g00469 247 MobiDBLite consensus disorder prediction 13 56 - -
Vian10g00469 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Vian10g00469 247 MobiDBLite consensus disorder prediction 159 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00469 Vian-Chr10 4316963 4317706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00469 39 243 C2H2 Transcription Factor Family AT4G17810 40.865 6.44e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian10g00469 zf-C2H2_6 2.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00469 - - gmx:100818142 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00469 10 4316963 4317706 Vian10g00469 10 4316963 4317706 ECH
Vian10g00469 10 4316963 4317706 Vian1g01529 1 16990564 16991217 PCT