Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00466 ATGGATTCTCGGGAACCGCACCAGCAACCGCAATTGCCAAACATGATGATGGGACCCACCTCCTACCCTTCCATGTTGGCCCCCGCCACCGCCCGATTTCCTTTCATCAGCAACAACCACCATCACCACCACAACCCTCCTCCTCCTCCACCTCCTCCCGAACCTCTCAACGACAACCATTCCTGCGAGGCTGCGCTGAAGCCGTGCGCGCTCGGAGTGGGTTCCTCGGAGTCCTCGAAGAAGAAAAGGGGCCGGCCCAGAAAATATTCTCCAGATGGCAACATTGCCTTGGGCCTGGTCCCAAATTATCCCGCCGCTTCTTCTGCGGAATCTCCCGCCAAGAAGCACCGCGGACGTCCTCCTGGTTCCGGAAAAAAACAGATGGACGCTCTCGGAATCTCTGGAACTGGCTTTACTCCGCATGTAATATCAGCGGAAGCTGGCGAGGACATTGGTGCAAAAATTATGGCCTTTTGTGAGCAAGGGCCACGGGCAGTTTGTATTCTCTCTGCCGTCGGTCCTATTCGTAATGTCACTATTCGACAGCCGCCTTCCGTCTCATCCCTATCTGGTCCTGATGTATCGTATGAGGGTGAATTTGAGATCATATCACTTACAGGTTTTACTCAACAATCTGAAAATAATAATGGTCATATCGGAATGCGTTCCTTGAGTATAAGTTTAGCAGGTCCTGATGGACGAGTATTGGGTGGCGAAGTTACTGGAGCTCTTACTGCAGCATCAGCAGTGCAGGTCGTTGTGGGTAGCTTTATTGCAGATGGAAAAAAGTCTAGCTCAAATAACTTGAAATCTGGACGTTCTACGACGCCATCATCCCAATTGTTAACTTTTGGTGCTCCTACGACTCCGACCACTCCTACTTCTCAGGGGCCTTCAACCGAATCATCTGAGGATAATGAAAATAGTAATTTTATTAAGGGCCCGGGAGGCCCGGGACTCTCTAACAATGCTAGTCAGCCTATTCATAACCTGCAGATGTACCATCATCAACTGTGGGCTGGCCATACTCAGCAGTGA 1038 0.5077 MDSREPHQQPQLPNMMMGPTSYPSMLAPATARFPFISNNHHHHHNPPPPPPPPEPLNDNHSCEAALKPCALGVGSSESSKKKRGRPRKYSPDGNIALGLVPNYPAASSAESPAKKHRGRPPGSGKKQMDALGISGTGFTPHVISAEAGEDIGAKIMAFCEQGPRAVCILSAVGPIRNVTIRQPPSVSSLSGPDVSYEGEFEIISLTGFTQQSENNNGHIGMRSLSISLAGPDGRVLGGEVTGALTAASAVQVVVGSFIADGKKSSSNNLKSGRSTTPSSQLLTFGAPTTPTTPTSQGPSTESSEDNENSNFIKGPGGPGLSNNASQPIHNLQMYHHQLWAGHTQQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00466 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 41 307 IPR039605 GO:0003680
Vian10g00466 345 MobiDBLite consensus disorder prediction 1 132 - -
Vian10g00466 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 257 IPR005175 -
Vian10g00466 345 MobiDBLite consensus disorder prediction 43 57 - -
Vian10g00466 345 Gene3D - 140 271 - -
Vian10g00466 345 ProSiteProfiles PPC domain profile profile. 135 279 IPR005175 -
Vian10g00466 345 SMART AT_hook_2 80 92 IPR017956 GO:0003677
Vian10g00466 345 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Vian10g00466 345 MobiDBLite consensus disorder prediction 1 18 - -
Vian10g00466 345 MobiDBLite consensus disorder prediction 263 326 - -
Vian10g00466 345 CDD DUF296 139 257 IPR005175 -
Vian10g00466 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00466 Vian-Chr10 4278600 4281810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00466 80 345 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 42.765 2.36e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00466 - - pvu:PHAVU_002G006700g 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00466 10 4278600 4281810 Vian1g01524 1 16919513 16924028 PCT