Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00463 ATGCCGGTTCCACTTGCCCCCTACCCTCCGCCACTTCCGCCACCTCCATATGCGCCTCCACCAAATGGTACCTTTGCTTACTCTACTCTTTCTTTATTTGCTATTCATGTTGGTGGTCCGCAGAGTCATCTTGTCTGTTCTGGGTGTAGAAACCTTCTGCTTTACCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACCACTGTGCCACCTCCTGAAATGGCCCAGTTAGTATGTGGAGGCTGTCACACTTTACTCATGTACATCCGTGGAGCCACAAGTGTGCAATGTTCTTGTTGTCACACAGTCAATCTGGCTTTGGAAGCAAATCAAGTGGCACATGTCAACTGTGGGAACTGTAAGATGCTACTGAGGTACCAATATGGAGCAAGATCCGTGAAATGTGCCGTTTGCAGTTTTGTAACATTAGTTGGGGCCTCAACAAGTACCACTGAGCAGAAATTCAACACCTAA 486 0.4835 MPVPLAPYPPPLPPPPYAPPPNGTFAYSTLSLFAIHVGGPQSHLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCKMLLRYQYGARSVKCAVCSFVTLVGASTSTTEQKFNT 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00463 161 Pfam LSD1 zinc finger 46 70 IPR005735 -
Vian10g00463 161 Pfam LSD1 zinc finger 121 145 IPR005735 -
Vian10g00463 161 Pfam LSD1 zinc finger 83 107 IPR005735 -
Vian10g00463 161 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Vian10g00463 161 NCBIfam zinc finger domain, LSD1 subclass 80 109 IPR005735 -
Vian10g00463 161 NCBIfam zinc finger domain, LSD1 subclass 118 148 IPR005735 -
Vian10g00463 161 PANTHER PROTEIN LSD1 41 150 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00463 Vian-Chr10 4260658 4262021 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vian10g00463 zf-LSD1 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00463 - - vun:114174628 248.44