Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00462 ATGAATTACAGTGATAATATTCTCTCCAATAGCCCTCTTGTGAAGAACACAAACGATCAAGCTAATTGCAAAACACTCTGGACGAAAGAATCATCTTCCAATTCAGACAATGGATGGATGGTGCCCTATAAATACTATGCTGTCAATGGTCCCATTTCTGATTCAAACCCTAATGTTGACTCATCCAGTTGGGTTTTGTGTAATGCGGTTCAATTGAAAGACATTTCGTTGAAACGCATGGAAATTATATACAAGGACACTGTGTCAAAGCTTGTTGCTTTGGGGCACAATGAGGATATTGCCGTGAAAGCGATTTTGCTCAATGTTCATTGTTATGGCTCCAATGATTTGGCTACAGACCTGCTGCACAACACCTTGACTTGTTTAGAAGAGGGGAGCATGGACATGTATGAGTTCAAGCCTGCGTTCTCTGATTTGAAGAAGCTTGAGGAGCACACTCTGAAGAATCTTGTGTCTTTGTTGCAAGAAGTGAGACTCGAGTTAGGCGAGGGTGATGCTATGTGGTGTCTCCTCATGAACGATTACAATGTGTTAAAGGCAATTACCATCCATATTCCTTTTGTAAGCATGTTTCCTCCTCCTTTAACCGAGCTTGAGAACGAGGAACGGAGATTTAGAAAAGGAGACTCAGATATTCCTTTGAAAGGGTTCTTTTGTGGTAAGGAGATGACTGTACGTTTACAGAGAGACATTGAGTTCCCGAAAAAATTTGATCTTACTCCTGCCATGATTTGTTCGTTGAAAAGCAATGTTGTAGCGTTTACTGACGGATACAAGGCCAACTCAAAACAGATGCAGTCAAATGAAGGAAAATTTCCTGGGATTAGCACTGTTTCAAAATTGGACTCTTCATCTGCTTCTGTGGCCATAATGCTTGGTGATTTGCCTAGTGATTCTCACAATATGAATGACCAGGATGACTTTAAGTCTGTGCTGAGTAAATTTCATCATCTAAATATTGATGAGAACTTGGAGTTTGTGGCAGAAGATGAGAAGGATTCGGTGATAGTCACTCTAGTGCATCAGATAAAGGATCTTGAGAAACAGGTAAAGGAGCGGAAAGATTGGGCACATGAGAAGGCAATCCAAGCTGCAAGAAAGCTAAACGGCTATCTAATTGAGCTGAAAACATTCAGGATAGAAAGAGAGGAAAATCAAAGACTGAAGAAGGGGAAAGAGGCAAATGAGGAGCTTGAGGACCCTACCATGGTGAGACTCTTAGAATTGGAGGAGGCCTTGAGAAAGGTTTGTGGTCAAACGGATCTTGCAACTGCAGGAGTTGGGAAACTTGAGACGGAGAAAGCTGAAATCAAAGCAGAGTTAGAAGCTTGTAAATTAAGTGCATCAGAGTATGTCGCAAGCTGCTTGCAAATTGCAAAAAAGGAGAAAAAGTGCTTAAAGAAGCTTCTGGCTTGGGAAAAACAGGAAGCGAAGATAAAACAGAATATTTCAGATGAAAAGCAGAAGATTTTGGAGATACAAGAAGAGTTGGCTCAGATTAAACAACGTGCAAAAGAAGCTGAGGTCATGAGGGATGAAGAGTTAAAGGCTAAGGAGGAAGCCTTAGCACTGATTGAAGAGGAACGCCGTTCTATGGAAGCAGCTGAGGCTAATAGAAAAAGAAATCTTAAGGCTTCAAACCTGAAGATGGAGATAGATTTCCAGCGTCGCAAAGATGATCTTTTAAGACTGGAGCAGGAGATTTCGTGTCTCAAAGCATCTGCACAGTCTGCTACTTTGCCTACATGTGAGTCTGAGGAAGCAGAGCCCCACACAGAGATAATTGCTAAGCTACTGCGAGAATTAGATAACGTGCCGGATTTTTTTGGAAAAGAAGCCACCGGTAATACTTATAGAGAATGCGTTATATGTGGAAAATATGAGGTTTCCGTAGTTTTCTTGCCATGTGCACACCAAGTTATGTGTGCCAGTTGCAGTGAAGAGTATGGAAGAAATGGCAAAGCTGTTTGTCCATGCTGCTGGGTTCCAATCGAACAGAGAATTCGTACATTTGGGGGAAGTTCGTAG 2049 0.4173 MNYSDNILSNSPLVKNTNDQANCKTLWTKESSSNSDNGWMVPYKYYAVNGPISDSNPNVDSSSWVLCNAVQLKDISLKRMEIIYKDTVSKLVALGHNEDIAVKAILLNVHCYGSNDLATDLLHNTLTCLEEGSMDMYEFKPAFSDLKKLEEHTLKNLVSLLQEVRLELGEGDAMWCLLMNDYNVLKAITIHIPFVSMFPPPLTELENEERRFRKGDSDIPLKGFFCGKEMTVRLQRDIEFPKKFDLTPAMICSLKSNVVAFTDGYKANSKQMQSNEGKFPGISTVSKLDSSSASVAIMLGDLPSDSHNMNDQDDFKSVLSKFHHLNIDENLEFVAEDEKDSVIVTLVHQIKDLEKQVKERKDWAHEKAIQAARKLNGYLIELKTFRIEREENQRLKKGKEANEELEDPTMVRLLELEEALRKVCGQTDLATAGVGKLETEKAEIKAELEACKLSASEYVASCLQIAKKEKKCLKKLLAWEKQEAKIKQNISDEKQKILEIQEELAQIKQRAKEAEVMRDEELKAKEEALALIEEERRSMEAAEANRKRNLKASNLKMEIDFQRRKDDLLRLEQEISCLKASAQSATLPTCESEEAEPHTEIIAKLLRELDNVPDFFGKEATGNTYRECVICGKYEVSVVFLPCAHQVMCASCSEEYGRNGKAVCPCCWVPIEQRIRTFGGSS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00462 682 Coils Coil 483 552 - -
Vian10g00462 682 SUPERFAMILY RING/U-box 604 674 - -
Vian10g00462 682 Pfam Zinc finger, C3HC4 type (RING finger) 626 673 - -
Vian10g00462 682 ProSiteProfiles Zinc finger RING-type profile. 628 667 IPR001841 -
Vian10g00462 682 PANTHER OS05G0141500 PROTEIN 37 676 IPR046934 -
Vian10g00462 682 Coils Coil 434 454 - -
Vian10g00462 682 Pfam Family of unknown function (DUF6592) 80 189 IPR046527 -
Vian10g00462 682 CDD RING-HC_MIP1-like 626 676 - -
Vian10g00462 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 618 679 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00462 Vian-Chr10 4253913 4257041 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00462 - - vra:106777712 1229.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00462 10 4253913 4257041 Vian1g01518 1 16841504 16847121 PCT