Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00459 ATGGGAAGCAATGGACTCTGCAATCTCTTTTCATGCTTCAAGGCATCTTCCAATCATGGCCATGGTGGCCATGGTGGCCATGGCCATAACCATAACCATAACCAGAGCCAGTTGGTTTTTGCGGAGACAGAGCCATTGGACGAAACCCTAGGCCACTCTTTCTGCTACGTCAGATCCTCCGCGCGCTTTCTCTCTCCCTCTCATTCCGATCGCATCCTCTCTCCCTCCAACTCTCTCCGCTTCTCCCCTTCTCATCGCTCCGATTTCCCCGAAACCGCATTCAAGGCCATTTCCGGAGCCTCGGTCAGCGCCAACAGTTCCGTGCCCAAAACCGTGCTCCAGTCCGAGGATGACGACACCACCGTCAATGGCTTCAGAGGAACGGCTTCCTTCAGCGCTCTCCCTCTGCAGCCCGCTCCCAGAGGAGGAGAAACTGCTCCCTCTGAGAGAGAGCGGAAGGCGTTCTTTCTCTCGGGGCCAATTGAGAGCGGCGCGCTCTCGGGACCCCTCGACGACTCCGTTTCGAGCTCTGCGGGAGTGCCCTTCTCTGCTCCGCTCGGTGGTGGAGTGTATGTGAAGAAGAAGCGGAAGAAGAGCATTGCCGGGTTGAGAAAGGCCTTCCAGCGGAGTCTCTCGGAGAAGAAGCGGCCTTGGGTGGTGCCTGTGGGGCGGAAGGGGAAGACGGAAGCGACGAGTGAGACGGAGAACGAGAGCAATGTGCAGTGGGCGCTGGGAAAAGCGGGGGAGGATCGTGTGCATGTCGTTGTATCGGAAGAACAGGGTTGGTTGTTCGTAGGGATATACGACGGTTTCAATGGCCCTGATGCGCCAGAGTTTCTCATGGGTAATCTTTACCGTGCCCTTCACAAAGAGCTCCAGGGTTTGTTTTGGGAACTTGAAGAACCGCAGTCGCAGGTGCAGGGAACTAACCCTGCACCTGAGCTGGAGGATAATGAAGCTGAACCCCGGAATGAGGTGGAGGTGGAGGAAGACTCTAGTTCTCTCCGAGGATCGGTTAAGAGAGTGACGTTTCAAGCGGAGGGGACTGAAAGTAGGAGGAGAAGGCTGTGGGAGTTTTTGGCTGAGGAGGATGATGCGGAGAACGGGCTCGATCTTTCCGGGTCTGATAGGTTTGCGTTTTCGGTTGATGATGCGCTCAGTGCTAGCAAGGAGGGTTCGGGAGGTAGTAGACGGTGGTTGATTTTGTCTAAGTTGAAGCATGGGTTGTCGAGGCATAAAGAGGGTCACGGGAGGAGTTTGTTGCCGTGGAGCTTGGGCGTGGGGGAGGAGAAAGAGAAGGTTGAGGTGGAAAATCCAACGACGGCAGAGGAGGAGGAGGAGGAGAAGGGTCACGGTGGGAGGAAGCGAAAAGTGGGGCCTGTGGATCATGAGTTGGTTTTGGGAGCGTTGTCTAGGGCGCTTGAGATGACTGAGCTTGCTTATTTGGATATGACGGATAAGCTGATTGATACCAATCCGGAGCTTGCTCTGATGGGGTCGTGTCTGTTGGCTGTGTTGATGAGGGATGAGGATGTTTATGTTATGAACGTGGGGGATAGCCGCGCCATTGTGGCACATTATGAGTGTGAGGAGGTTCACGCTACTAGTAAGGAAACGGGAAATGGTGGAGGCATTGGGTCAAGCGGGGAGTGCATAGTGGAGGAGTCTTCGGCTCCAGACGAAGGTGGTGTCGTGTTAGGGAATGAGGGTCCTGCTAGGGAACGGAGGTTGGTTGCATTGCAGCTGTCCACTGATCACAGCACCAGCATTGAAGAGGCAAGTTTGTTTTACTACTGCTCTCTTCGTGTGATGTGTGTGCTTGAAGTTGTTAGAATTAAGAATGAGCATCCTGATGATAGCCATTGTATTGTGAATGATAGAGTGAAAGGCCGTCTTAAGGTTACTAGAGCTTTTGGTGCTGGATTTTTGAAACAGCCAAAGTGGAATGATGTGGTGCTGGAAATGTTTCGTAATGAATATATTGGCACTGCTCCATATATATCCTGCTTCCCTTCATTGCGTCACCATAGATTATGCCCTAGAGATCAGTTCTTGATCCTCTCATCTGATGGTTTGTATCAATACCTAAGCAATCAAGAAGTGGTTTCTCAGGTCGAGAGCTTTATGGAAAAGTTTCCGGATGGAGATCCTGCCCAGCATTTAATAGAAGAGCTGCTCCTACGTGCTGCCAAGAAGGCTGGAATGGATTTCCATGAGTTGCTGGATATACCTCAAGGAGATCGGAGGAAGTATCATGATGATGTGACTGTAATGGTGATATCACTTGAAGGAAGAATCTGGAAATCATCAGGGAAGTATCCATGA 2325 0.5204 MGSNGLCNLFSCFKASSNHGHGGHGGHGHNHNHNQSQLVFAETEPLDETLGHSFCYVRSSARFLSPSHSDRILSPSNSLRFSPSHRSDFPETAFKAISGASVSANSSVPKTVLQSEDDDTTVNGFRGTASFSALPLQPAPRGGETAPSERERKAFFLSGPIESGALSGPLDDSVSSSAGVPFSAPLGGGVYVKKKRKKSIAGLRKAFQRSLSEKKRPWVVPVGRKGKTEATSETENESNVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGNLYRALHKELQGLFWELEEPQSQVQGTNPAPELEDNEAEPRNEVEVEEDSSSLRGSVKRVTFQAEGTESRRRRLWEFLAEEDDAENGLDLSGSDRFAFSVDDALSASKEGSGGSRRWLILSKLKHGLSRHKEGHGRSLLPWSLGVGEEKEKVEVENPTTAEEEEEEKGHGGRKRKVGPVDHELVLGALSRALEMTELAYLDMTDKLIDTNPELALMGSCLLAVLMRDEDVYVMNVGDSRAIVAHYECEEVHATSKETGNGGGIGSSGECIVEESSAPDEGGVVLGNEGPARERRLVALQLSTDHSTSIEEASLFYYCSLRVMCVLEVVRIKNEHPDDSHCIVNDRVKGRLKVTRAFGAGFLKQPKWNDVVLEMFRNEYIGTAPYISCFPSLRHHRLCPRDQFLILSSDGLYQYLSNQEVVSQVESFMEKFPDGDPAQHLIEELLLRAAKKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYP 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00459 774 Gene3D - 205 769 IPR036457 -
Vian10g00459 774 SMART PP2C_4 233 760 IPR001932 -
Vian10g00459 774 CDD PP2Cc 450 762 IPR001932 -
Vian10g00459 774 ProSiteProfiles PPM-type phosphatase domain profile. 230 762 IPR001932 -
Vian10g00459 774 PANTHER PROTEIN PHOSPHATASE 2C 225 761 IPR015655 GO:0004722|GO:0006470
Vian10g00459 774 MobiDBLite consensus disorder prediction 105 130 - -
Vian10g00459 774 SUPERFAMILY PP2C-like 246 763 IPR036457 -
Vian10g00459 774 Pfam Protein phosphatase 2C 606 730 IPR001932 -
Vian10g00459 774 MobiDBLite consensus disorder prediction 431 458 - -
Vian10g00459 774 MobiDBLite consensus disorder prediction 302 334 - -
Vian10g00459 774 MobiDBLite consensus disorder prediction 105 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00459 Vian-Chr10 4238999 4243745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00459 1 773 PP2C-type Phosphatase Gene Family AT2G35350 55.914 0.0 784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00459 10 4238999 4243745 Vian1g01514 1 16804996 16809210 PCT