Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00446 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTTCCAAAGGGACTCAGGGTTCTTGTACTTGACGGAGATAGAAGTTCTGCTGCTGAGATAGGAGAACAACTTGAGGCCATGGACTATCATGTTTCTACCTTCTATGACGAGAACGAAGCTTTGTCAGCAGTCTCAAGTAGCCCTGAAGACTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCAGCAGCCTTGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCTACCATTATGATTTCAAAGAACCAGTGCCTGAACACCACGATGAAGTGCATTGCGCTTGGTGCCGTTGAGTTTCTCAGTAAACCACTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAAGGCCTTTAATTCTAGGGCAAATGGTCTGTCTGAGTCACTAAAACCTGTCAAAGAATCTGTAGAATCAGTGCTGCAGTTTCAAACAGGCAATGAACAAGATAAAACTCATAAAAGAACCATGTCGATTGATTTAGAGAATGTGTCCAGATTTGGTGATAATGACAATGAGCAATCTGTATGTGATAAATATCCGGCTCCTTCAACCCCACAATTGAAACATGGGACACGGTTATTGGATGATGGAGATTGCCATGAGCAGACTAATTTCTCAACAGAAAAAGAAAGTGGAGAACATGATGGGGAATGCAAATCAGTCGAAACTTCATGTGAGAATTTGAATGCTGAAAGTACTCCTCAACCAACTGAACCTGAGGAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAAGGGCGAGAGAGCTGTTTCACTGAATCTACAGAATGAAAAGTTTCTCAGCAATGCAGATGGTCATACATCTCCAAAAAAGATGGGAGTTTTTAATGATTCATGTGAGATTAAAGCTAACAGGAAGAAGATGAAAGTAGACTGGACGCCCGAGCTGCATAAAAATTTTGTGAAGGCAGTTGAACAACTAGGTATTGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGTTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATGCACAGGAGACAGAGTGCACCTGGGGAAGAAGATCGAAAATGGCACAATCAAAGAGATGTAATGCAAAGGAATTTTTATCTGCAAAGACCAATCATGGCCTACCCTCCCTATCACTCTAATCAAACCATTTCTCCAGCACCTATATATCCTATGTGGGGACAACCAGGAAGTCAAACAGCTGCTGTACAGATTTGGGGGCCTCCTGCGTACCCCTTGTGGCATCCTACAGAAAATTGGAACTGGAAGCCTTATCCGGGGATGCATGTGGATGCTTGGGGATGCCCATTGTTCCCACCTCCTCAAGCTCCTGGTTTTCACTTCAATCAAAATATACCTGGATTGCACACTCCTAAACCAGTGGATTACAGATTCAGCATGCCGCGTAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTTGTGAAAGAAGCAATTAACAAGCCATGGCTACCATTGCCCTTAGGACTCAAAGCTCCTTCCACGGATAGTGTGTTAGCTGAGCTCTCCAAACAAGGCATATCTAGCATCCCTCTTGGCAACAAGGGTTCTTCTGCTCCAAAACCCTGCTGA 1683 0.4361 MVCTANDLQGWKDFPKGLRVLVLDGDRSSAAEIGEQLEAMDYHVSTFYDENEALSAVSSSPEDFHVAIVEVSTSSSLGGFKFLENAKDLPTIMISKNQCLNTTMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNSRANGLSESLKPVKESVESVLQFQTGNEQDKTHKRTMSIDLENVSRFGDNDNEQSVCDKYPAPSTPQLKHGTRLLDDGDCHEQTNFSTEKESGEHDGECKSVETSCENLNAESTPQPTEPEETLIKEEEDFANGSKGERAVSLNLQNEKFLSNADGHTSPKKMGVFNDSCEIKANRKKMKVDWTPELHKNFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRMHRRQSAPGEEDRKWHNQRDVMQRNFYLQRPIMAYPPYHSNQTISPAPIYPMWGQPGSQTAAVQIWGPPAYPLWHPTENWNWKPYPGMHVDAWGCPLFPPPQAPGFHFNQNIPGLHTPKPVDYRFSMPRSSFEHHPAEEVVDKVVKEAINKPWLPLPLGLKAPSTDSVLAELSKQGISSIPLGNKGSSAPKPC 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00446 560 SUPERFAMILY CheY-like 16 137 IPR011006 -
Vian10g00446 560 SMART REC_2 18 128 IPR001789 GO:0000160
Vian10g00446 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 312 371 IPR017930 -
Vian10g00446 560 Gene3D - 18 145 - -
Vian10g00446 560 MobiDBLite consensus disorder prediction 182 198 - -
Vian10g00446 560 MobiDBLite consensus disorder prediction 182 238 - -
Vian10g00446 560 FunFam Two-component response regulator-like APRR2 17 142 - -
Vian10g00446 560 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Vian10g00446 560 Pfam Myb-like DNA-binding domain 318 367 IPR001005 -
Vian10g00446 560 MobiDBLite consensus disorder prediction 209 238 - -
Vian10g00446 560 NCBIfam myb-like DNA-binding domain, SHAQKYF class 315 369 IPR006447 GO:0003677
Vian10g00446 560 SUPERFAMILY Homeodomain-like 314 371 IPR009057 -
Vian10g00446 560 FunFam Two-component response regulator 311 373 - -
Vian10g00446 560 Gene3D - 311 372 - -
Vian10g00446 560 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Vian10g00446 560 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 548 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00446 Vian-Chr10 4119169 4123691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00446 1 548 Response Regulator Gene Family AT4G18020 48.116 2.03e-139 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vian10g00446 Response_reg 1.8e-09 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00446 10 4119169 4123691 Vian1g01507 1 16694275 16699164 PCT