Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00431 ATGAACTGTTTGTTCTTCAAAAAGAAATCAAAATCCCACCCAGAACTCCCAAAGGGACGGAAGAAGAAAAGCCAGGTTGTGAATGGAGCACCGAAGTCCCCAAGCTCGGTACCATCGCCGAGGAGCATAAAAGAATTGTACAGAGAGAAGGAACAGAGTTACAGAATTTTCAGTTTAAAAGAGCTTATAGATGCAACAAATGGTTTCAATAGCATGCTGAAGATTGGAGAAGGTGGTTTTGGAAAAGTATATAGAGGAACCATCAGTCCTAAAGATGGAGCTTCTCCAATTGTAGTCGCAATAAAAAAACTTAACGCGCATGGCTTACAGGGACACAAAGAATGGCTTGCAGAAGTTCAATTTCTGAGCGTTGCTAACCACCCTAATTTGGTTAAGCTTCTGGGATACTGCTCAATAGACAGTAAAAGAGGAATCCAACGGTTGTTGGTATATGAGTTCATGTCTAACAGGAGTCTGGAAGATCATCTTTTCAGTGTTTCTTTACCTCCTTTGCCTTGGCCAACAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTGTATTATCTCCACAACGGATTGGAGATTCAGGTGATCTACCGCGATTTCAAATCTTCAAACGTGTTGCTGGACAAGCAATTTCATCCCAAACTTTCAGATTTTGGTCTTGCAAGAGAGGGTCCAACAGGTGACAAGACTCATGTATCTACTGCGGTAGTGGGGACACAGGGATATGCTGCCCCAGAGTACGTTCAGACGGGTCATCTGAAAGTTCAGAGTGATATTTGGAGTTTTGGTGTGGTGCTTTATGAGATCCTCACAGGGAGACGTGCATTGAATAGAAACCGTCCAATAGGAGAACAAAAGCTTGTAGAATGGGTTAAACATTACCCTGCCAACAGTAGCAGGTTCAGCACCATCATCGACCGACGTCTCAATAACCAATACTCTCTTGCTGCAGCTCGGAAAGTAGCCAACTTGGCAGATTGCTGCTTGAAGAAGAATCCTGAAGACAGACCCTCCATGAGTCAGATAGTGGAAACCTTGAACCAAGCATTGCAGGATTCACAAACCCAAAACACTTCACCTAATAACACTCCTATATCCACACCATCCAGATTGGTCTCAACTGCTAAATAA 1140 0.4351 MNCLFFKKKSKSHPELPKGRKKKSQVVNGAPKSPSSVPSPRSIKELYREKEQSYRIFSLKELIDATNGFNSMLKIGEGGFGKVYRGTISPKDGASPIVVAIKKLNAHGLQGHKEWLAEVQFLSVANHPNLVKLLGYCSIDSKRGIQRLLVYEFMSNRSLEDHLFSVSLPPLPWPTRLQIMLGAAQGLYYLHNGLEIQVIYRDFKSSNVLLDKQFHPKLSDFGLAREGPTGDKTHVSTAVVGTQGYAAPEYVQTGHLKVQSDIWSFGVVLYEILTGRRALNRNRPIGEQKLVEWVKHYPANSSRFSTIIDRRLNNQYSLAAARKVANLADCCLKKNPEDRPSMSQIVETLNQALQDSQTQNTSPNNTPISTPSRLVSTAK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00431 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Vian10g00431 379 SUPERFAMILY Protein kinase-like (PK-like) 51 349 IPR011009 -
Vian10g00431 379 MobiDBLite consensus disorder prediction 1 41 - -
Vian10g00431 379 Gene3D Phosphorylase Kinase; domain 1 49 153 - -
Vian10g00431 379 Gene3D Transferase(Phosphotransferase) domain 1 154 371 - -
Vian10g00431 379 CDD STKc_IRAK 75 351 - -
Vian10g00431 379 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 154 363 - -
Vian10g00431 379 Pfam Protein tyrosine and serine/threonine kinase 74 349 IPR001245 GO:0004672|GO:0006468
Vian10g00431 379 ProSiteProfiles Protein kinase domain profile. 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00431 379 PANTHER OS01G0588500 PROTEIN-RELATED 32 353 - -
Vian10g00431 379 ProSitePatterns Protein kinases ATP-binding region signature. 75 103 IPR017441 GO:0005524
Vian10g00431 379 MobiDBLite consensus disorder prediction 353 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00431 Vian-Chr10 3872949 3874908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00431 1 349 Glycoside Hydrolase AT3G07070 42.382 3.11e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian10g00431 PK_Tyr_Ser-Thr 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00431 - - gmx:100782248 610.527