Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00426 ATGGAAGAAGAACGATACGAGACTCTGAAGGAGCTTGGTTCGGGGAACTTTGGAGTGGCAAGGTTGGCCAAAGACAAGAAGACAGGGGAACTTGTTGCTATCAAATACATAGAAAGAGGAAAAAAGATTGATGCGAATGTCCAAAGGGAGATAGTAAACCACCGATCTCTAAGGCATCCGAATATTATTAGGTTCAAAGAGGTATTTCTGACCCATACTCATTTAGCTATTGTCTTGGAGTATGCTGCTGGAGGTGAACTCTTCGAGAGGATATGCAATGCTGGTCGATTGAGTGAAGATGAGGCAAGATTTTTCTTCCAGCAACTGATATCTGGAGTTAGCTATTGTCATTCCATGCAAATATGTCATAGAGATCTGAAATTGGAAAACACTCTACTTGACGGAAATCCAGCTCCTAGACTTAAAATTTGTGACTTTGGTTTCTCCAAGTCTGCTTTGCTGCACTCTCAGCCTAAGTCAACGGTTGGAACTCCTGCATACATTGCTCCAGAAGTTTTGTCACGAAAGGAATATGATGGAAAGATTGCAGATGTTTGGTCGTGTGGTGTGACTCTTTATGTGATGTTAGTTGGAGCATACCCATTTGAAGATCCAGAAGATCCTAAGAATTTCAGAAAGAGTATTGGGAGAATTATGAGTGTTCAATACGCCATACCCGACTACGTTCGTGTTTCTAAGGAGTGCAGACATCTTATCTCTTCTATTTTTGTTGCAAATCCTGCCAAGAGGATCACCATGTCAGAGATAAAACAACACCTTTGGTTTAGGAAGAACTTGCCGAGGGAGATAATCGAGGCTGAAAGAAGGGGTTACGAGGAAACACAAAAGGACCAACCAAGCCAGAGTGTGGAAGAAATAATGCAGATCATAGAAGAAGCAAGGACAAAAATTCACACTCGTGAGCAAACTTCGACAGGATCGTCGAACGTTGTACATGTTGATGAGGCTAACGAGGAAGTTGAAGACCACTTTGCCAAATCTAGTCCTTGA 1011 0.4214 MEEERYETLKELGSGNFGVARLAKDKKTGELVAIKYIERGKKIDANVQREIVNHRSLRHPNIIRFKEVFLTHTHLAIVLEYAAGGELFERICNAGRLSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKSIGRIMSVQYAIPDYVRVSKECRHLISSIFVANPAKRITMSEIKQHLWFRKNLPREIIEAERRGYEETQKDQPSQSVEEIMQIIEEARTKIHTREQTSTGSSNVVHVDEANEEVEDHFAKSSP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00426 336 MobiDBLite consensus disorder prediction 301 336 - -
Vian10g00426 336 CDD STKc_SnRK2 5 261 - -
Vian10g00426 336 Gene3D Phosphorylase Kinase; domain 1 1 81 - -
Vian10g00426 336 MobiDBLite consensus disorder prediction 321 336 - -
Vian10g00426 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vian10g00426 336 Gene3D Transferase(Phosphotransferase) domain 1 82 270 - -
Vian10g00426 336 Pfam Protein kinase domain 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00426 336 SUPERFAMILY Protein kinase-like (PK-like) 4 289 IPR011009 -
Vian10g00426 336 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Vian10g00426 336 FunFam Serine/threonine-protein kinase SRK2E 1 81 - -
Vian10g00426 336 PANTHER SERINE/THREONINE KINASE 4 299 - -
Vian10g00426 336 SMART serkin_6 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00426 336 FunFam Serine/threonine-protein kinase SRK2E 82 270 - -
Vian10g00426 336 ProSiteProfiles Protein kinase domain profile. 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00426 Vian-Chr10 3827733 3830210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00426 5 274 CBL-interacting serine-threonine protein kinases AT4G24400 43.416 1.13e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vian10g00426 Pkinase 9.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00426 K14498 - gmx:547790 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00426 10 3827733 3830210 Vian1g01476 1 16322643 16326085 PCT