Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00420 ATGAAAACACCAGAAAATAATGGTCATTCGAAGGAAGAAAGATATGGCTCTTTGATGAAAGATGGGGCCACTTCCCCCGTTAGGCCAGTGTTTAAGCGACGTAAAGTTTCCGCCATTCGGGATTTCCCTGATGGGTGTGGACCATCTGCTTCAAAGATTGATGAAGTATCAAATATAAATACTGCAGGTTGTGGTTCTGTTAATGGTACAATTGTTGAGGTTAAGAATGGTGAACATTTAGTGGGTGTGAAAACTTCCACATGTGAAAATGATGGTTGGCATTCTGAGGTGAAAGGTTTTCGTTTCACCGAGACTCATGTCCCAACAGCTGACAGTGGTTTGGATAAGGACAACCCCATGGTCTCATCTTATCATGTGGATGGATCTACTGCTGAAGATAAAACGGGAATAGTGACTATTAGCCAAATCAATGATTGTGGATCTACTGCTGAAGATAAACCGGGGGTAGTAGTGACTAATAGCCAAAGCACTGATCTTGGTTTGAACGAGGAAAGCCCTGTAGACACATCTCATAGAGTGGATGAACATAATGCCGAAGATGAAGCTGCAAAAGTGACTCTTGGGCGAACAACTGATTGTGGTGTGAATCAGGAAATCCCTGTGGTCTCATCTCATCAAGTGGACGGGTCTACTCGAGAAGATAACCCTGCAAAAGTGATGCTTGCTCAAACAGAGGACTGCAGTTTGAATCTGGAAAACCATGAGGTCTCATCACATCAAGTGAATGGGCCCATTGCAGAAGATAAACTGGCAAGAGTGACTGGTGAGCGAACAACTGACTGTGGTTTGAATAAGGAAAACCCTGCGGTCTCATCTCATCTAGTGGATGGCCCTGCTGCCGAAGATAAACCTGCAGAAGTGCCCTTAATGGACCAGGAAACTTTGAATACAGAGTTTTCAAGAACTGCAAACACTGGAAAATGTAACTCCTCATATATGTTGGAGTCGTCTTCACCAGTGGGTGAGATGGCTGTGCCGGATGGTTCAAAACACTTATCCATTGATAAAACATCAGCTTCCAGTGCTTGTATGGTGGAGCCTATAACTAGAAGGTACCTTCCGCAAAGAAAAGTTTCAGCTGTTAGAAACTTCCCTCCTTTATGTGGACGTAGTGCTCCACGTCTCGGTAAGGACAAGCATGTGTGTCTAGAGGGGACCTCTTCTTTGAACAACAAGACAAAAGGTCAACAAAACCTGGCTGTAGATGACAATACATTGAAAAAAGTAGCAGCTACTGATGTAAAAGAAGGTAAAAGTAATATTCAGGATGAATATAATAGCAACAGGAAGCTTGTTGACATCGATCAACTTGATTCTGAAAGAAATTCTGCAGAGAGATTGAAAAAGCTGCGTGCATGTGAACCATCGTCTGAGATGAAAAAGTCAACTGAAAATGAGAGAGAAAAGTATGCTACACCCCCTGAAACAAGTAATCACCATCAGATCAAAATAAATTCTAAGGCGGTGGTAAAAGAGAAAAATAGGGATGAGACAAAGCCTTCGTGGATATCTCAATCTAAGCATAAATTGAAAGGGAATTTTAATAGACTGCAGGTCACATCACAGAGGAAAGTAATACTAGGTTTGATGGCTGATTCAGAATGTCCGTGGAGGTCTGATAAAGGTACCTCCAAATTTAAGTTGGTTGCTGGTAATAGTAAAGGCAAGAGAAAGAAAGGTGATTCTTTTGCATTGCCTGATAGGTCTAGAACAGAGTATAGTGGTTTGTTGAATGATTCTGAGAAGAAACCTTTGAAAAAGAAAAAGGGAAATCCTGCTTCTGTAGGTATGGGTGAATTAGTACTTTGGGAAAAGGAGGATTATCTTAACCCTAATGAAAATGATGACACTCTTCAAATTGTTCTGAGATCAAATGAGTTTGATGTAAACCTTACTCCCTCTTCTCATTCGAATTTCACTGGTGATGAGAATGACCCAAATGTGACCCGAAAAAAAGTGAGGGAAACATTACGGTTGTTTCAAGTTATTTGTAGAAAGCTTTTACAGGAAGTAGAATCAAAGTTAAATGAGCGAGCAAATAATAAGAGAGTTGATTTAGTTGCTTCAAAGATCCTTAAGGAGAATGGGAAATATGTCAACACAGGCAAACAAATACTAGGCTGTGTCCCTGGTGTCGAAGTCGGTGATGAATTTCAATATAGAGTGGAGCTTAATATAGTTGGCCTTCATCGTCCAATTCAAGGTGGCATAGATTATGTGCGACACAACGGTAAGATCCTTGCAACCAGTATTGTTGCATCAGGGGGCTATGCTGACGATTTGGATAATTCGGATGTATTGACATATACAGGACAGGGTGGAAATGTGATGAACAGTGATAAGGAACCTGAAGATCAGAAGCTTGAGCGGGGCAATCTTGCTTTGATGAACAGTAGTATTGAAAAGAATCCTGTTAGAGTAATTCGTGGCTCTGAGTCAATGGATGGAAAATGCAGGACTTATGTTTATGATGGGGTGTATGTAGTTGAGGCAGGTTGGGATGAACACGGACCACACGGGAAGAAAATTTTTAAATTTCGACTGCAAAGAGAACCTGGTCAACCAGAGCTTCCTTTGAGAGTAGTGAAGAAATCTAAAAAGTTCAAAACGAGAGAAGGTGTATGTGTTGCTGATATTTCTTTTGGAAAAGAACGAATTCCAATATGCGCTGTGAACACCATAGATGATGAAAAACCTCCTCCATTTAATTACATAACTAGCATGATATACCCCAAATTCCATCTCCTTCCTGCCGAAGGATGTGATTGTATTAGTGGATGCTCAGATTTGGAAAAATGTTCGTGTGTGGTGAAGAATGGGGGAGATATTCCATTCAATCACAATGAGGCTATTGTACAAGCAAAACCTTTAGTCTATGAGTGTGGACCTACTTGTAAGTGTCCTTCAACGTGCTATAATAGAGTCAGCCAACTTGGCATAAAGTTTCCACTTGAAATATTTAAAACCCAGTCAAGGGGATGGGGTGTGAGATCCCTGAGTTCAATCCCTTCAGGAAGTTATATCTGTGAATATATAGGGGAGCTTCTTGAAGAAAAGGAAGCTGAACTAAGGGCAGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTGCAGCAACAGTACTCTCTGGGATGGACTTACGACTCTCATGCCGGATGCACAGACAAGTTCCTGCGATGTTGTGAAGGATGGTGGTTTTACTATTGATGCTGCTGAGTTTGGCAATATAGGGAGATTCATTAACCATAGTTGCTCACCTAATATAATTGCTCAGAACGTCCTTTATGATCATCATGACACCAGAATGCCTCACATAATGTTCTTTGCTGCTGATAACATTCCTCCTTTGCAAGAGCTGACCTACGATTACAACTACGAACTAGATCAAGTCCGCGATTCTGATGGTAATATAAAAAGGAAGTATTGTTACTGCGGTTCTGCTGAATGTACTGGCAGAATGTATTGA 3489 0.4099 MKTPENNGHSKEERYGSLMKDGATSPVRPVFKRRKVSAIRDFPDGCGPSASKIDEVSNINTAGCGSVNGTIVEVKNGEHLVGVKTSTCENDGWHSEVKGFRFTETHVPTADSGLDKDNPMVSSYHVDGSTAEDKTGIVTISQINDCGSTAEDKPGVVVTNSQSTDLGLNEESPVDTSHRVDEHNAEDEAAKVTLGRTTDCGVNQEIPVVSSHQVDGSTREDNPAKVMLAQTEDCSLNLENHEVSSHQVNGPIAEDKLARVTGERTTDCGLNKENPAVSSHLVDGPAAEDKPAEVPLMDQETLNTEFSRTANTGKCNSSYMLESSSPVGEMAVPDGSKHLSIDKTSASSACMVEPITRRYLPQRKVSAVRNFPPLCGRSAPRLGKDKHVCLEGTSSLNNKTKGQQNLAVDDNTLKKVAATDVKEGKSNIQDEYNSNRKLVDIDQLDSERNSAERLKKLRACEPSSEMKKSTENEREKYATPPETSNHHQIKINSKAVVKEKNRDETKPSWISQSKHKLKGNFNRLQVTSQRKVILGLMADSECPWRSDKGTSKFKLVAGNSKGKRKKGDSFALPDRSRTEYSGLLNDSEKKPLKKKKGNPASVGMGELVLWEKEDYLNPNENDDTLQIVLRSNEFDVNLTPSSHSNFTGDENDPNVTRKKVRETLRLFQVICRKLLQEVESKLNERANNKRVDLVASKILKENGKYVNTGKQILGCVPGVEVGDEFQYRVELNIVGLHRPIQGGIDYVRHNGKILATSIVASGGYADDLDNSDVLTYTGQGGNVMNSDKEPEDQKLERGNLALMNSSIEKNPVRVIRGSESMDGKCRTYVYDGVYVVEAGWDEHGPHGKKIFKFRLQREPGQPELPLRVVKKSKKFKTREGVCVADISFGKERIPICAVNTIDDEKPPPFNYITSMIYPKFHLLPAEGCDCISGCSDLEKCSCVVKNGGDIPFNHNEAIVQAKPLVYECGPTCKCPSTCYNRVSQLGIKFPLEIFKTQSRGWGVRSLSSIPSGSYICEYIGELLEEKEAELRAGNDEYLFDIGNNCSNSTLWDGLTTLMPDAQTSSCDVVKDGGFTIDAAEFGNIGRFINHSCSPNIIAQNVLYDHHDTRMPHIMFFAADNIPPLQELTYDYNYELDQVRDSDGNIKRKYCYCGSAECTGRMY 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00420 1162 MobiDBLite consensus disorder prediction 160 180 - -
Vian10g00420 1162 ProSiteProfiles YDG domain profile. 714 857 IPR003105 -
Vian10g00420 1162 MobiDBLite consensus disorder prediction 458 481 - -
Vian10g00420 1162 ProSiteProfiles Post-SET domain profile. 1146 1162 IPR003616 -
Vian10g00420 1162 Gene3D - 697 877 IPR036987 -
Vian10g00420 1162 MobiDBLite consensus disorder prediction 1 29 - -
Vian10g00420 1162 Pfam SET domain 1000 1132 IPR001214 GO:0005515
Vian10g00420 1162 Pfam Pre-SET motif 886 981 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian10g00420 1162 SUPERFAMILY SET domain 871 1138 IPR046341 -
Vian10g00420 1162 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 434 1156 - -
Vian10g00420 1162 MobiDBLite consensus disorder prediction 458 488 - -
Vian10g00420 1162 ProSiteProfiles Pre-SET domain profile. 926 986 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian10g00420 1162 MobiDBLite consensus disorder prediction 555 599 - -
Vian10g00420 1162 SUPERFAMILY PUA domain-like 697 871 IPR015947 -
Vian10g00420 1162 Gene3D SET domain 878 1162 IPR046341 -
Vian10g00420 1162 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 292 1162 IPR025794 GO:0016571
Vian10g00420 1162 ProSiteProfiles SET domain profile. 989 1132 IPR001214 GO:0005515
Vian10g00420 1162 MobiDBLite consensus disorder prediction 1 18 - -
Vian10g00420 1162 SMART set_7 989 1138 IPR001214 GO:0005515
Vian10g00420 1162 MobiDBLite consensus disorder prediction 581 595 - -
Vian10g00420 1162 Pfam SAD/SRA domain 713 861 IPR003105 -
Vian10g00420 1162 SMART G9a_1 709 861 IPR003105 -
Vian10g00420 1162 SMART preset_2 883 973 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00420 Vian-Chr10 3777265 3780753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00420 654 1159 Su(var)3-9 homologs AT5G04940 40.762 6.66e-115 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian10g00420 SAD_SRA 1.6e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00420 K11420 - vum:124837331 1887.85