Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00419 ATGGGTAAACAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGACCACCCGAGAAGCCGGTACTATGCAATGCATGTGGGTCTCGGTGGAGGACCAAGGGAACTCTTGCAAATTATACCCCTTTACATGCTCGAACAGAAACTGATGCTTGTGGGGATCAAAGGGTTTCCAGGATAAAGAGCATATCAAATAAGAGAGAAATGACATTGCTCAAGCCAAATAATGACCATGATAATGAACTATCTGGAGAGTTTGCACCTGATTACAACCAGGGATGTCAAATCTTTGCAGATGAAGATGCAAGCAACCGATCAAGTTCCGGATCAGCTATTTCTAACTCAGAGAGCTGTGCACAATATGGTGCCATGGATGCTTGTGATCTGACAGGTCCTGTTCAGTCAGTGGTTTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGCGTTGGCCGGCCAAAGGCTTCTTCTGTTGAGAAGCTAACAAAAGATTTATGTACCATTCTTCATGAACAACAGTCTTATTTCTCTGCATCTTCTGAAGAAGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTATATAGTCCGTGATGAAGAGTCCGAGGCTAGTTCTCTTTCAGTTGATAATAAACAATGCCCAACGAGTGAGGCATATTCTTATGTTGGTCCCATTATGATGCATAATGATTCTAGTTACTTGAAGCCATCATCTCTAGAAGTTGAAAAGATCAGGAACTATACTGACCAAGGATGGCAGCCGGAACAACATAAAAGTGATAAGTCTCAACTTGAAAGAGTACAGATCCTTGGCAATCATGAATCACCCCTGTGCTCTATAGATTTAAATGATATAGTAAACTATGAAGAGTTTTTGAGAATCTTGACAAATGAAGAGCAACAACAGTTACTGAAGTTACTTCCTGGGGTTGATACTGCTAAACTTCCTGATAGCCTTAAAGTCATGTTCAATAGTTCTCAATTCAAGGAGAACATAACTTGTTTTCAGCAGCTTCTTGCGGAAGGGGTTTTTGATATCTCTTTGTTGGGGGCAAAACCTGAAGACTGCAAGACTTTGAAAAGACTTGCAATATCCAATCTGTCGAAGTCAAAATGGGTTGAACACTATAATTTTCTCAAGAAATGTAAAAACAAAGGTGGAAAATTTGATTCTTTTGGATCTGCTGTTACAGCAACAACTAATGGTGCAAACAAGAGAACGCGTGACAGCAGAAATCAAAACTTCCCAGAATTGAATACAGAAATGAGGAGCCCAAAAAGAATGATCACAAAGGTTAGCTGTGAGGTGAAAGAGGGTGTAGAAGATGGTGCTTGCTATAGTCCAAAAAGCCTATTTGCTTTGCCTACTGATGCTAGTTCACTCATGCTTGGTTCTTTGAACTTTGTGGAGGAGATCAGTGAGCAGGATCTGCTGCTAGAGGTGCCATCTAACACTTCTTTTCCTCAGGCAGAGCTCTTGCACCCAAGTGCTAGTAGCAGCTCAGTCTACTCACATCTTATTCATCATTAA 1590 0.4151 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDACGDQRVSRIKSISNKREMTLLKPNNDHDNELSGEFAPDYNQGCQIFADEDASNRSSSGSAISNSESCAQYGAMDACDLTGPVQSVVWDAMVPSKKRTCVGRPKASSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSILIRHPSYIVRDEESEASSLSVDNKQCPTSEAYSYVGPIMMHNDSSYLKPSSLEVEKIRNYTDQGWQPEQHKSDKSQLERVQILGNHESPLCSIDLNDIVNYEEFLRILTNEEQQQLLKLLPGVDTAKLPDSLKVMFNSSQFKENITCFQQLLAEGVFDISLLGAKPEDCKTLKRLAISNLSKSKWVEHYNFLKKCKNKGGKFDSFGSAVTATTNGANKRTRDSRNQNFPELNTEMRSPKRMITKVSCEVKEGVEDGACYSPKSLFALPTDASSLMLGSLNFVEEISEQDLLLEVPSNTSFPQAELLHPSASSSSVYSHLIHH 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00419 529 PANTHER OSJNBB0038F03.10 PROTEIN 1 519 IPR044589 -
Vian10g00419 529 Gene3D - 3 74 IPR013088 GO:0006355|GO:0008270
Vian10g00419 529 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Vian10g00419 529 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Vian10g00419 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Vian10g00419 529 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 293 405 IPR044867 -
Vian10g00419 529 Gene3D - 284 390 IPR038108 -
Vian10g00419 529 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Vian10g00419 529 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Vian10g00419 529 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Vian10g00419 529 Pfam Asx homology domain 277 375 IPR028020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00419 Vian-Chr10 3766535 3771416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00419 1 514 C2C2-Gata Transcription Factor Family AT4G17570 51.124 1.85e-149 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian10g00419 ASXH 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00419 - - gmx:100803914 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00419 10 3766535 3771416 Vian1g01463 1 16140965 16146146 PCT