Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00407 ATGGCCGTTTCAGGGGGCGATACTTGTTGGCTGAAGAGATTTCCCCTTGGTAACGGTAGACAAGAAGCAGTCACAGATCAACATGTTGTCTATATCAAAACAAGAGTTGTTCGCGACTTTTATACAGGTGCAAACGGGGAACCTTCTCCTCCCCCGGATTCAAAGATAGAACATGATTCTAAGCTGTTTCTTTTGGGGCCGCTAATTGGTTCTCTTGTCCTAAACAGTATTCTCTTTGCTACAGTTGCTTTGTTTATTCTCAAGAAGCAGAAAGTGAATAGGGTTTCCAAAGCCGCCCCTAGTCCTTTGGAAACGAATTTGCATTCGTTTACTTATGAAAATTTGAAAAAGGCCACAGAGAATTTTCAGGAGGAAATAGGCAGAGGTTCTTATGGCATTGTTTATAAAGGACAACTAGAAGCAGGTTCTTGTCATGTGATTGCTGTGAAGAGATTGGACAGATTGGTAGACGAACGAGAGAAAGAATTTAGGACTGAATTGAGTTCCATCGGTAGAACCTGCCACAAAAATCTGGTCAGGTTAATCGGATTTTGTGACGAGGGAATCAATAGAATACTGGTGTACGAGTTCATGAGCAACGGCAGTCTTGCAGACATCCTGTTTGGGAAATCCAAGCCCAGATGGAATGTAAGGGTTGGATTTGCTTTGGGGATTGCAAGAGGGTTGGTATACTTGCACGAAGAGTGTGAGACTCCCATTATTCATTGTGATATAAAACCTCAAAATATACTGATAGACGAGTATTTCAATCCAAAGATATCAGACTTTGGGTTGGCAAAGTTGTTGTTGTCTGAGCAAAGTAGAACGACCACAATGATCCGAGGAACACGAGGATACGTGGCTCCTGAATGGTTTAAGAATGTTGCTGTGACGGTTAAAGTGGATGTTTACAGCTTTGGGGTAATGCTGTTGGAAATAATTTGCAGCAGAAGAAGTGTGTTGATGATGGAGCATGGGGAAGAAGAGAAAGCAGTGCTGACAGATTGGGCTTGTGATTGCTTTGTGGAAGGAAGAATAGATGTTCTTGTGGAGAATGATGAAGAGGCCTTATCTGACTATGTGAGGCTACAAAAATGGGTGAAAATTGCAATATGGTGCATTCATGAGCAACCTCAGATGAGACCAACAATGGGGATTGTCATGCAAATGCTCGAAGGCTTGGTTGAAGTTCCTAACCCACCATCTCTCATGCGTTGA 1218 0.4261 MAVSGGDTCWLKRFPLGNGRQEAVTDQHVVYIKTRVVRDFYTGANGEPSPPPDSKIEHDSKLFLLGPLIGSLVLNSILFATVALFILKKQKVNRVSKAAPSPLETNLHSFTYENLKKATENFQEEIGRGSYGIVYKGQLEAGSCHVIAVKRLDRLVDEREKEFRTELSSIGRTCHKNLVRLIGFCDEGINRILVYEFMSNGSLADILFGKSKPRWNVRVGFALGIARGLVYLHEECETPIIHCDIKPQNILIDEYFNPKISDFGLAKLLLSEQSRTTTMIRGTRGYVAPEWFKNVAVTVKVDVYSFGVMLLEIICSRRSVLMMEHGEEEKAVLTDWACDCFVEGRIDVLVENDEEALSDYVRLQKWVKIAIWCIHEQPQMRPTMGIVMQMLEGLVEVPNPPSLMR 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00407 405 ProSiteProfiles Protein kinase domain profile. 120 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00407 405 Pfam Protein kinase domain 123 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00407 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Vian10g00407 405 Gene3D Transferase(Phosphotransferase) domain 1 198 397 - -
Vian10g00407 405 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 5 402 - -
Vian10g00407 405 SMART serkin_6 120 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00407 405 ProSitePatterns Protein kinases ATP-binding region signature. 126 150 IPR017441 GO:0005524
Vian10g00407 405 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 198 399 - -
Vian10g00407 405 SUPERFAMILY Protein kinase-like (PK-like) 100 392 IPR011009 -
Vian10g00407 405 CDD STKc_IRAK 126 394 - -
Vian10g00407 405 FunFam S-receptor-like serine/threonine-protein kinase 89 197 - -
Vian10g00407 405 Gene3D Phosphorylase Kinase; domain 1 83 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00407 Vian-Chr10 3661652 3662869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00407 106 393 Receptor kinase-like Gene Family AT1G60800 42.712 1.26e-71 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vian10g00407 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00407 - - gmx:100789263 610.527