Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00406 ATGTACGAAGAAACTACCTACGAGTCTGATTTGGCTCTTTTGGATTCCATTCGCCGCCACTTACTCGGGGACTCCGAGGATCTCAAATTCGGACCCCCGATTGTTAACTCGGGCAACACTTCGCTTTACTCTCGGAGCTCCAGTTTCGGTAGGTTGTACCCGTGTTTGAGTAACGACTGGGGAGAACTTCCTCTTAAGGAAGATGATTCGGAGGACATGGTGCTCTACGGTGTTCTTCGCGATGCCGTCAACTTAGGGTGGGTCCCTTCTCTCAACGCGGACTCACCGGACAGTTTTTCTTCGGGTTTCGTCCCGGAAGTGACCGTGAAACCCGAACCGGATGTATTTCCGGCACCGGAACCTGTTTTCACTCCCCCGGTGGTTCACAAGGATGCACCGGCGGTTGTTCCGGCGAAGGGGAAGCACTACCGCGGCGTGAGGCAGCGGCCGTGGGGAAAATTCGCGGCGGAGATCCGTGACCCGGCTAAAAACGGGGCTCGGGTTTGGCTCGGAACGTTTGAGACGGCTGAGGACGCCGCGCTGGCTTACGACCGAGCCGCGTACAGAATGCGCGGCTCTCGGGCTTTGTTGAATTTCCCGCTTCGGATTAATTCAGGCGAGCCTGAACCGGTTCGGGTGACGTCGAAGCGAGCATCGCCGGAGCCTTCGTCTTCGTCTTCGTCGGAGAGTGGATCGTCGGTTAAGAGGCGGAAGAAAGTGGTGGGGTCGACGGTGACGGCTCCAAGTGGATTGAGAACAGGGCAAGTGGGAAGTCAAGTGGCTCAGTGCACACGTGCGGAACAGTTGTTGGTTAACTAA 819 0.5678 MYEETTYESDLALLDSIRRHLLGDSEDLKFGPPIVNSGNTSLYSRSSSFGRLYPCLSNDWGELPLKEDDSEDMVLYGVLRDAVNLGWVPSLNADSPDSFSSGFVPEVTVKPEPDVFPAPEPVFTPPVVHKDAPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRVTSKRASPEPSSSSSSESGSSVKRRKKVVGSTVTAPSGLRTGQVGSQVAQCTRAEQLLVN 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00406 272 SMART rav1_2 142 206 IPR001471 GO:0003700|GO:0006355
Vian10g00406 272 Gene3D AP2/ERF domain 141 203 IPR036955 GO:0003700|GO:0006355
Vian10g00406 272 PRINTS Ethylene responsive element binding protein signature 143 154 IPR001471 GO:0003700|GO:0006355
Vian10g00406 272 PRINTS Ethylene responsive element binding protein signature 166 182 IPR001471 GO:0003700|GO:0006355
Vian10g00406 272 PANTHER DNA-BINDING DOMAIN 137 233 IPR044808 GO:0003700|GO:0009873
Vian10g00406 272 CDD AP2 141 200 IPR001471 GO:0003700|GO:0006355
Vian10g00406 272 FunFam Ethylene-responsive transcription factor 2 141 201 - -
Vian10g00406 272 MobiDBLite consensus disorder prediction 207 258 - -
Vian10g00406 272 MobiDBLite consensus disorder prediction 217 231 - -
Vian10g00406 272 Pfam AP2 domain 142 192 IPR001471 GO:0003700|GO:0006355
Vian10g00406 272 SUPERFAMILY DNA-binding domain 142 202 IPR016177 GO:0003677
Vian10g00406 272 ProSiteProfiles AP2/ERF domain profile. 142 200 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00406 Vian-Chr10 3655407 3656225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00406 8 271 AP2-EREBP Transcription Factor Family AT4G17500 52.740 6.46e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian10g00406 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00406 K09286 - gmx:100819649 384.8