Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00393 ATGGCATCCCCCAAGAAAACTAACAGCAGAGGAGCATGGACCGCGGAGGAAGATCAGAGACTAGCTCAATGCATTGAAATTCACGGTGCAAAGAGGTGGAAAACTATTGCAGTTAAATCAGGTCTAAACAGATGTGGAAAAAGTTGCAGGTTGAGATGGTTAAACTATCTGAGACCCAATATCAAGAGGGGCAACATATCAGTTGAAGAAGAAGATTTGATTATTAGGCTTCACAAACTGCTAGGAAACAGGTGGGCATTGATAGCTAAGAGACTTCCAGGGCGAACAGACAATGAAATAAAGAACTACTGGAATACTTGTTTGTGCAAAAAAGTTAATCATCACAAAAAGGTGAAACCAGAAACTTCAATGGCGCAACCGACACATTCGACTCAGAATACCGAGGAAAAAGTAGCAGTAGAGCATAAAGTAGCCACTGATGATGGAAATGGATACTCAGAAGTTAACTTTGATTTCAACGAATTCTTCAATTTCTCCATTGAAGGACTCTATTCGTTCGATTGGTTCAGGAGAAGAGGCGTTGAAGATGGAGAAGCAAAGCATGAAGGGTTACGTATTCGGTTCCAGAAGTTGAGATGTGGAAGGTGTATTCGGTTATGGGGTGTGCGTATTCGGATATGTTGCAGAGTGAGAGGAAAGCTGGGTGTTGTATTCGATTCCGCTTGCTTGTATTCGGTTCCAGGCGTTGTTCAGCGGGTGTACGGTTCCAGGTGCTGCTTTATTCGGTTCCAGCACGCTTCGGAGCAGGGTGAGTAG 777 0.4376 MASPKKTNSRGAWTAEEDQRLAQCIEIHGAKRWKTIAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHKLLGNRWALIAKRLPGRTDNEIKNYWNTCLCKKVNHHKKVKPETSMAQPTHSTQNTEEKVAVEHKVATDDGNGYSEVNFDFNEFFNFSIEGLYSFDWFRRRGVEDGEAKHEGLRIRFQKLRCGRCIRLWGVRIRICCRVRGKLGVVFDSACLYSVPGVVQRVYGSRCCFIRFQHASEQGE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00393 258 SUPERFAMILY Homeodomain-like 10 104 IPR009057 -
Vian10g00393 258 CDD SANT 12 57 IPR001005 -
Vian10g00393 258 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 5 138 - -
Vian10g00393 258 Gene3D - 67 142 - -
Vian10g00393 258 Gene3D - 10 62 - -
Vian10g00393 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 57 IPR017930 -
Vian10g00393 258 FunFam MYB-related transcription factor 9 62 - -
Vian10g00393 258 SMART sant 9 59 IPR001005 -
Vian10g00393 258 SMART sant 62 110 IPR001005 -
Vian10g00393 258 FunFam Transcription factor TT2 66 137 - -
Vian10g00393 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Vian10g00393 258 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vian10g00393 258 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
Vian10g00393 258 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Vian10g00393 258 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vian10g00393 258 CDD SANT 67 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00393 Vian-Chr10 3547787 3551774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00393 10 127 MYB Transcription Factor Family AT5G40330 60.331 1.75e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian10g00393 Myb_DNA-binding 1.9e-17 CL0123