Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00379 ATGAGTAGGGGAACTATAGAAGATGTGGCAATTATAGGAGGATTGGTTGGAGTCCAATTTATCTATGCAGGGAATGCTGTGTTCATGGGTTATGCATTATCATTAGGCTTCAGCTCTCTCACCATTATCATTTTGACTTCTTTGGCTACATTCCTTGTTCTGTTCCCCGTTTCATTTTTCTTTGAAAGGAGCAAGTGGCCGAAGAATTGTGATTTCAAGTTGATTAAACAGCTATTGTGTCTATCGTTTGGAGGACTGTTGTTCCAGTATTTATTCCTCAAGGGACTCGATCTAACTTCGCCAGCAATGGGAACTGCTATGCCAAACATTGCCCCAGGTCTTATCTTCATCATTGCATGGATTTCTGGGTTAGAGAAAGTGAACTTAAACAATCGGTATAGCAAAGTAAAAATCATGGGAACATTGCTTTGTGTCTTGGGAGCTCTCACAATGAGTATAATGCAAAGCATTTCGACTGGTGCACCCGAGCAAAAGACTCCATCAGGTTTTGTCTTCAACACACAAAAGATGATCGGTTGCTTCTATCTCGTGGTTGCAGTCGTGATTTTGTCGAGCAACGTCGTTCTGCAGGCTTTTACTCTTGGAGATTTTCCGGCACCGATGTCCTTGGGTGCAATAACGTCCTTGTTGAGCGCATTCATGACTGCAACCGTTCAGGTGCTTGAAAAACACAGGCTGAAAACTGGGCGGCTACTTCTGAGGTCTGGAAATTTAATTGGCTATTTTATTATGGCAGGTGCTGTGAGTGGAATATGCCTGAGTTTCAACGGGTGGGCACTGAAGAAAAAAGGGCCAGTTTTTGTCTCCATGTTCAGCCCCATTGGTACAGTGTGCTCTGTCATTTTCGCGGTTATTAAACTTGGAGAAAGTATGAGTGCTGGAAGTCTTGGAGGCATGTTTCTCATGTTCACTGGACTCTACTTGGTTCTCTGGGCCAAAGGGGAAGAAGGACTGCCAAATGGAGATAGCTTAGAGAGTGAGTTTGACATAGAGAGGCCTCTTTTAACGTTGAAACAGCTGCTTCCTTCACGTAGTGGTGACAGAGAATTCCCAAGAGCATACTGTAAAAAGGCAGAAGTCTCTTGGGTTTGA 1113 0.4376 MSRGTIEDVAIIGGLVGVQFIYAGNAVFMGYALSLGFSSLTIIILTSLATFLVLFPVSFFFERSKWPKNCDFKLIKQLLCLSFGGLLFQYLFLKGLDLTSPAMGTAMPNIAPGLIFIIAWISGLEKVNLNNRYSKVKIMGTLLCVLGALTMSIMQSISTGAPEQKTPSGFVFNTQKMIGCFYLVVAVVILSSNVVLQAFTLGDFPAPMSLGAITSLLSAFMTATVQVLEKHRLKTGRLLLRSGNLIGYFIMAGAVSGICLSFNGWALKKKGPVFVSMFSPIGTVCSVIFAVIKLGESMSAGSLGGMFLMFTGLYLVLWAKGEEGLPNGDSLESEFDIERPLLTLKQLLPSRSGDREFPRAYCKKAEVSWV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00379 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 321 - -
Vian10g00379 370 PANTHER WAT1-RELATED PROTEIN 14 324 IPR030184 GO:0016020|GO:0022857
Vian10g00379 370 Pfam EamA-like transporter family 177 317 IPR000620 GO:0016020
Vian10g00379 370 Pfam EamA-like transporter family 17 152 IPR000620 GO:0016020
Vian10g00379 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00379 Vian-Chr10 3412814 3415060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00379 1 334 Nodulin-like Gene Family AT5G47470 57.440 1.85e-132 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00379 - - gmx:100784734 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00379 10 3412814 3415060 Vian1g01418 1 15515898 15523596 PCT