Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00378 ATGTTTCAGGCTCGCAGATCCCGAGTTCGACTCCGGCGCCGTCGTGCAAGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACCCGCCGACGATCCAAGCGCCCACGCAGGCCCGCCAATTCATGGAGTCCCCCGAGCCCGTGAGCTCCGTCTCCGACACTTCCCCCGAAGAAGACGTGGCCATGTGTCTCATGATGCTGTCCAGAGACCGTTGGAGCAAGAACACCCACGCTGCTGTCGACAACAACAACCCCGTGGAGGACGAAGAAGAGAGATCACTGGAAGAGATCAAGTTCAGAAGAGTTCGCCGGAAGCACCAGTGCCAGAGTTGCCAGAAGACGTTTCGATCTTCGCGCGCATTGGGCAGTCACCGAAGCATTTGCGAAGGTTCGGGCAACGATAGTAAAATCTTCGAATGCCCCTTTTGTTCTAAGGTATTTGGGTCTGGTCAAGCTCTGGGTGGCCACAAGAGATCTCACATGGTACCTTCTTCCTCCTCCACTGCCAATGATTCCACCCGTTTCAAAGAAAGCTTCATAGATCTCAACTTCCCTGCTCCACCGGAAGAAGAAGACGACCTCAGCGTTGTTTCCGATGCCCAATTTGATGACTGA 615 0.548 MFQARRSRVRLRRRRARQGERDRVKEPNPPTIQAPTQARQFMESPEPVSSVSDTSPEEDVAMCLMMLSRDRWSKNTHAAVDNNNPVEDEEERSLEEIKFRRVRRKHQCQSCQKTFRSSRALGSHRSICEGSGNDSKIFECPFCSKVFGSGQALGGHKRSHMVPSSSSTANDSTRFKESFIDLNFPAPPEEEDDLSVVSDAQFDD 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00378 204 MobiDBLite consensus disorder prediction 154 173 - -
Vian10g00378 204 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 160 IPR013087 -
Vian10g00378 204 SUPERFAMILY beta-beta-alpha zinc fingers 104 160 IPR036236 -
Vian10g00378 204 MobiDBLite consensus disorder prediction 30 56 - -
Vian10g00378 204 MobiDBLite consensus disorder prediction 185 204 - -
Vian10g00378 204 MobiDBLite consensus disorder prediction 1 56 - -
Vian10g00378 204 Pfam C2H2-type zinc finger 138 161 - -
Vian10g00378 204 Pfam C2H2-type zinc finger 106 125 - -
Vian10g00378 204 Gene3D Classic Zinc Finger 78 162 - -
Vian10g00378 204 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 10 202 IPR044303 GO:0006355
Vian10g00378 204 MobiDBLite consensus disorder prediction 1 18 - -
Vian10g00378 204 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Vian10g00378 204 SMART c2h2final6 138 160 IPR013087 -
Vian10g00378 204 SMART c2h2final6 106 126 IPR013087 -
Vian10g00378 204 MobiDBLite consensus disorder prediction 186 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00378 Vian-Chr10 3384612 3385226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00378 47 197 C2H2 Transcription Factor Family AT3G60580 40.805 9.61e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian10g00378 zf-C2H2_6 1.5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00378 - - vun:114173003 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00378 10 3384612 3385226 Vian1g01417 1 15510898 15511740 PCT