Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00376 ATGGCGGAGAAAGCGGCAGCGCCACCACCACCGTCGAAGCCTCTGACATCTCAAGAGTGGGAAACCCTAATCGAGGACTTCCAGAATGGCGTCCAGCACAAATGGACCTCTCTGGATCCTCTCTTCGATCTTCTCCTCTCCTCTCTTCTCCGCAAGGACTTCCCTCTCTTTCTCAAGCTCCAACTCCTTGTCTTCCTCGACGAATTCTCTCTCTCCTTCCTCACCTCCCACCACCATCTCCATCGCCTCGTCGAAGCGCTCAAAGCCGTTGTCCATGCGCCGCTCGACGTTGCCGCTTCCGCTTTCAAAGACCAGTTCATGGTCTCCGCTACCTCGATTCTCATCTGCACATCGGAAAACGTTGTCGTCGAGGCCGAAACGGAGACTAACCTGGTCGAGCTGCTGCTGACAGTTGTAAACCGGCCTAATTTCGGTTCGGACCGGCAAACGCGCGGCGTGGCGTGCGAATGCCTGAGGGAATTGGAGCGATGGAAACCGGGATTGCTCTCCGATGTGGTTGGACACCTGTGGAGTTTGTGCCAGAGCGAACGAACTCACGCTTCGCAGTGTTACCTCTTGCTCTTCACATCGGTGATTCACAGCATCGTCGCTCGGAAACTCAGTGTTTCGATTCTCAACACATCGGTTCCGATGATCCCTTTCTACGCGCCGAACTGTGTGACGGATTCGGGTTCAGGTTCGGAGTCAGGTTCGGGATTGAATGTGAAGGAGTTGAGGAGGGCGTTGTCATTTTTGCTGGAGTGGCCGCATGTGATGACTCCTTGCGGGATTATGGAGTTTGTGTCTATGATAGTTCCCGTGGCTTTGGCATTGGAATTGCAACCTTCCATGCTGAAGGTGCAGGTGTTCGGGATGATTCATTCCTTTGACCCTGTTCTGTGCCATGCTGTTTTGAGCATGTATGTGCATTTCTTGGAGGCCTTTGAAGGTCAAGAGGGAGAGGTTTCTCGCAGGATCTTGTTGATTTCGAGAGAATCTCAGCATTTTTTGGTGTTTCGCTTGTTGGCTATCCACTGGTTGTTGGGTCTCAATCAGTTCATTTTCGAGAAGACGAAGCCCACCATCGAATTGTGCTCCACTTTTTATCCCGCTTTATTTGATCCTCTGGCTTTGAAAGCCTTGAAGCTTGACCTTCTTGCGTTTTCCTCGGTTTGTGCTAATGTGTTGAGGCTGAAAAGTGGTTCTGATGAGTTGATTGATCCAGTGAAGCTGTTTGAAAATGGTCTTGTTTGTGTCTCTTCTTTCAAATGGCTGCCTCCCACGAGCACCGAGACTGCTGTTGCATTCCGCACCTTCCATAAGTTTCTGATTGCTTCTTCTTCTCATTCTGACAATGATCCTTCCACAGCCAGAAATCTGTTGGACTCTGCCATTTTTCGCACTTTGCAGGGGTTTCTTGTGAACATGATGTTGGAAAGTAGAAGACTGGTTCCTGTTGTCGTAGCATTTGTTGACCGGTTACTCTCCTGTCAAAAGCATTCTTGGTTGGGTGAGTGCTTACTTCAGAAATTTGATGAGCACTTGCTTCCCAAAGTGAGAATGGATTATAAGTTGGTTTATTGCTTCCCCATATTTGATAGAATTGCTGAAAATCAGACTATACCCCCTCGTGGATTGTTAGAGCTGCTTACGAATTTCATGATTTTCCTTGTGGAGAAACATGGCCCAGATACAGGGATGAAATCTTGGTCCCAGGGAAGCAGAGCTCTTGGAATTTGCCGAACTATGCTTATGCGCCACCATAGCTCTAGATTGTTCCTTAGATTGTCTCGGCTGCTTGCATTTACATGTCTATGTTTTCCTGATCTGGAGGTCCGTGATAATTCAAGGATTTACTTGCGTATGCTGGTCTGTATTCCAGGGAAGAAGCTTAGAGACATCCTGAACCTCGGGGACATGATTCTTGGAATTTCGCCATCTTCACATCCAACCTCATTTTTTAACGTTCAGTCTCCTCGACCTTCTCAGAAATTCAAGTCATTTAAAAATTTATCATCCTGCATTCACCTTGAGCGTTTGCGCCCATTGCTAGTCAAACAATTTTGGTCTCTGTCGTTGTCAAATTTAGTTGTTAGTAACGCCAATCCTACTTATCTGGAGAGCATCAGAGATTTCAAAGCTCCTGGTGAGGAAAAGGAAATTTCTGACAGTTCCAATACACAGATCATTCAGGAAACTAGAAGGATAAATCAGCCACAAGAGCCACTCCGTGTTATGGATTCTAAAGTCGCAGAAATTTTGAATACATTAAGGAAGTATTTTTCCTGCATTCCCGACTTCAGATATATGCCAGGTCTCAAAGTCAGAATATCATGCAGTTTGAGATTTGAATCTGATACTTTTAATCGCATGTTGGGAATTGATAAAACTGTCCCATCCTCGGAAGAGATAGACACACTTCCAGCTATATATGCTACTGTGTTAAATTTCTCGTCATCTGCACCATATGGATCAATTCCATCCTGTCGTATACCTTTTCTTCTTGGTGAACCTTACAATAAAGATTCTGCATCTCAAAATGTCTCCCTAAGTATTGTTCCTGTTGGTGTCAACGATTCCAGAGAAGAGGAAAAATATAGAGCTACTGTTGTAGTTGATTTGGAACCCAGGGAACCCACACCAGGTATAGTTGATGTTCACATTGAAACAAATGCAGAAAATGGTCAAATCATCCAAGGTCAACTTCAAGGAATCACAGTAGGCATAGAAGACATGTTTCTCAAGGCTATTGTCCCATCAGATATTCCAGAAGATGAAACACCTCGATACAACTTTAACCTGTTCAATACTTTGTGGGAGGCATGTGGCTCATCCTCCAGCACTGGCCGGGAGACCTTTCAGTTGAAAGGGGGTAAAGGGATTGCTGCCATCGGTGGAACTCAATCTGTCAAGCTTCTTGATGTCCCTGCAGCATCTTTGATCCAGGCAACTGAGCGCCATTTGGCACGCTTTGTTGTGGGTGTGAGTGGGGAGCCACTTATTGATGCTGTATGGGAAGGGGGAATCATTCAAAATGTCATTTTGGAAGATGCTTCTCCTGATGCTAGTTTTGTGAAGATTTTTTCCAGCCTTTGCAAGGGTCTTCCTCGTTTCAAACTTTGCCTGAAGTTTTTAGATGGTATGGATTTGTTAGTTGTACATGGTCTTGTAACTCTTCTTAATGCATATCTTGGAATATTGATTTTCATGGAGCATGTTCATCCAAGATTTATAATGTTGTTTCTTGATGTTGTAATTCCAGGAAAGAACCCTGGTAAGGTTCACGGATCACTTGCACGTGCCGGCAAAGTCAGAGGCCAAACCCCCAAAGTAGCTAAGCAGGACAAAAAGAAGAAGCCACGTGGACGCGCCCACAAGAGGATGCAATACAATCGCCGATTCGTCACCGCCGTGGTGGGATTTGGCAAGAAGAGGGGTCCCAACTCGTCTGAGAAGTGA 3459 0.4591 MAEKAAAPPPPSKPLTSQEWETLIEDFQNGVQHKWTSLDPLFDLLLSSLLRKDFPLFLKLQLLVFLDEFSLSFLTSHHHLHRLVEALKAVVHAPLDVAASAFKDQFMVSATSILICTSENVVVEAETETNLVELLLTVVNRPNFGSDRQTRGVACECLRELERWKPGLLSDVVGHLWSLCQSERTHASQCYLLLFTSVIHSIVARKLSVSILNTSVPMIPFYAPNCVTDSGSGSESGSGLNVKELRRALSFLLEWPHVMTPCGIMEFVSMIVPVALALELQPSMLKVQVFGMIHSFDPVLCHAVLSMYVHFLEAFEGQEGEVSRRILLISRESQHFLVFRLLAIHWLLGLNQFIFEKTKPTIELCSTFYPALFDPLALKALKLDLLAFSSVCANVLRLKSGSDELIDPVKLFENGLVCVSSFKWLPPTSTETAVAFRTFHKFLIASSSHSDNDPSTARNLLDSAIFRTLQGFLVNMMLESRRLVPVVVAFVDRLLSCQKHSWLGECLLQKFDEHLLPKVRMDYKLVYCFPIFDRIAENQTIPPRGLLELLTNFMIFLVEKHGPDTGMKSWSQGSRALGICRTMLMRHHSSRLFLRLSRLLAFTCLCFPDLEVRDNSRIYLRMLVCIPGKKLRDILNLGDMILGISPSSHPTSFFNVQSPRPSQKFKSFKNLSSCIHLERLRPLLVKQFWSLSLSNLVVSNANPTYLESIRDFKAPGEEKEISDSSNTQIIQETRRINQPQEPLRVMDSKVAEILNTLRKYFSCIPDFRYMPGLKVRISCSLRFESDTFNRMLGIDKTVPSSEEIDTLPAIYATVLNFSSSAPYGSIPSCRIPFLLGEPYNKDSASQNVSLSIVPVGVNDSREEEKYRATVVVDLEPREPTPGIVDVHIETNAENGQIIQGQLQGITVGIEDMFLKAIVPSDIPEDETPRYNFNLFNTLWEACGSSSSTGRETFQLKGGKGIAAIGGTQSVKLLDVPAASLIQATERHLARFVVGVSGEPLIDAVWEGGIIQNVILEDASPDASFVKIFSSLCKGLPRFKLCLKFLDGMDLLVVHGLVTLLNAYLGILIFMEHVHPRFIMLFLDVVIPGKNPGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00376 1152 MobiDBLite consensus disorder prediction 1112 1129 - -
Vian10g00376 1152 MobiDBLite consensus disorder prediction 1102 1129 - -
Vian10g00376 1152 PANTHER AP-5 COMPLEX SUBUNIT BETA-1 1 1044 IPR038741 GO:0016197
Vian10g00376 1152 Pfam Ribosomal protein S30 1093 1149 IPR006846 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00376 Vian-Chr10 3357182 3365971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00376 1092 1152 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 96.721 2.20e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00376 K19022 - gmx:100801171 1702.57