Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00373 ATGGTGTCACTGCAAGTACTGCTCGTGGTTTTCACCTCTATATTCCATGCAACAACAGTGACGTCTACACCCCACCACGACCTTACCTTAAACACATTCTCTTCCGCCAACTTCTCCAAGAACCAGCCCTGCGTCGGACCCATCGGCCACCGTCGAATCACGGTTGACATTAACGGCGGTGGCCACTACCGGTCCGTTCAAGACGCCGTCAATGCCGTCCCAGACAACAACAGAAGGAATATCCTCATTAAAATCAACGCCGGATGCTACAAAGAAAAGGTGGTGGTGCCCGTGACGAAGCCGTACATAACGTTTGAGGGTGCAGGTAGAGAAGTGACGGTGATAGAATGGCATGATCGAGCCAGTGACCCTGGTCCCAGTGGACAGCAGCTTCGTACTTACAGAACCGCTTCTGTTACTGTTTTTGCCAGCTATTTTTCTGCCAGAAACATCAGCTTCAAGAACACAGCGCCTGCACCAATGCCGGGGATGCAGGGATGGCAAGCGGTGGCGTTTCGCATATCCGGCGATAAGGCATACTTCTCCGGCTGCGGGTTCTACGGCGCACAAGACACACTTTGTGACGATGCTGGCAGACATTACTTCAAGGAATGCTACATTGAAGGATCCATCGATTTCATTTTTGGCAATGGCAGGTCCATGTACAAGGATTGCTGGCTGCACTCAATAGCAAGCAGGTTTGGGTCGATAGCGGCCCAGGACAGGAAGCAGGAGGAGGAGAAGACAGGGTTCGCATTCGTAGGATGCAGGGTGACAGGTACAGGTCCACTCTATGTGGGACGAGCAATGGGACAGTATTCTAGAATCGTCTACTCCTACACATATTTCGATGACATTGTTGCACATGGTGGTTGGGATGATTGGGACCATGCAGACAATAAGAACAAGACTGTGTTCTTCGGAGTGTACAAGTGTTGGGGACCAGGAGCAGAGGCTGTTCGTGGGGTTTCACTGGCCCGAGACTTAGATTTTGAAACGGCTCATCCATTTATCAGGAAGAGTTTCTGCACATCACTTCATAGTGATTTTCCTCTTCCATAA 1062 0.5056 MVSLQVLLVVFTSIFHATTVTSTPHHDLTLNTFSSANFSKNQPCVGPIGHRRITVDINGGGHYRSVQDAVNAVPDNNRRNILIKINAGCYKEKVVVPVTKPYITFEGAGREVTVIEWHDRASDPGPSGQQLRTYRTASVTVFASYFSARNISFKNTAPAPMPGMQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCWLHSIASRFGSIAAQDRKQEEEKTGFAFVGCRVTGTGPLYVGRAMGQYSRIVYSYTYFDDIVAHGGWDDWDHADNKNKTVFFGVYKCWGPGAEAVRGVSLARDLDFETAHPFIRKSFCTSLHSDFPLP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00373 353 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 48 343 - -
Vian10g00373 353 Pfam Pectinesterase 53 325 IPR000070 GO:0030599|GO:0042545
Vian10g00373 353 SUPERFAMILY Pectin lyase-like 51 344 IPR011050 -
Vian10g00373 353 Gene3D - 49 349 IPR012334 -
Vian10g00373 353 FunFam Pectinesterase 49 347 - -
Vian10g00373 353 ProSitePatterns Pectinesterase signature 2. 207 216 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00373 Vian-Chr10 3340968 3344978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00373 45 347 Carbohydrate Esterase AT5G47500 79.868 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00373 - - gmx:100816190 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00373 10 3340968 3344978 Vian10g00373 10 3340968 3344978 ECH
Vian10g00373 10 3340968 3344978 Vian1g01411 1 15463917 15467131 PCT