Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00349 ATGAAAAAAGTAGCTTCTAAAAGGATTGACCCAGAAGTGATAAAAGACATTGATCTCTATAAAATCGAGCCATGGGATCTTCAAGAATTATGCAAAACTGGAAATGATGAACAAGATGAATGGTACTTCTTTAATCATAAGGACAAGAAGTATCCAACAGGAATTCGTACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCTACAGGGAGAGACAAGGCAATTTACTGTAAGCATTGTCTTACTGGAATGAGAAAGACTCTTGTGTTTTACAAAGGAAGAGCACCCAATGGACAAAAATCTGACTGGATCATGCATGAGTATCGGCTACAAACTATTGAAAATGGAACTCCTCAGGAAGAAGGGTGGGTTGTATGTAGAGTGTTCAAAAAACGAATGACAACAGTGAGGAAAATGGGTGATTACGTGTCGCCATGTTGGTATGATGACCAAGTCTCGTTCATGCAAGAACTGGAATCTCCAATTCCAATTTCTAACCCTAATGCACCAAATCGTCACCCCTACCCCAGCAAGGAGTTGGAATTGCAATTCAATATTCCCCATGACGCTTTCCTCCAACTTCCACAACTTCAAAGTCCCGTGATTCTTCAATCTGCGGCTAGTTTGAGTTTTAGCCCAGTTGTCTCTTACGGCTATGGTAGCAAGAACAATGGAAACGCTTTGCAGTCATCATCTCTCACTCAAGAACATCGACAGTTTCATTATGCTAGTAATGATCAATCTATGGATTGGCGAGTACTTGACCAGTTTGTGGGTAATGAGCTGAGTCACGATGAACATTTTTCCAATGTGGTTCACCAGATGAAGTTGCCGGCAGACGGATCTACAAAACCAGAAACCGGTCAGGAAAGTGCTTCAACTTCCATCTCCGGTTCCCAGATTGACCTCTGGAAATGA 918 0.4172 MKKVASKRIDPEVIKDIDLYKIEPWDLQELCKTGNDEQDEWYFFNHKDKKYPTGIRTNRATKAGFWKATGRDKAIYCKHCLTGMRKTLVFYKGRAPNGQKSDWIMHEYRLQTIENGTPQEEGWVVCRVFKKRMTTVRKMGDYVSPCWYDDQVSFMQELESPIPISNPNAPNRHPYPSKELELQFNIPHDAFLQLPQLQSPVILQSAASLSFSPVVSYGYGSKNNGNALQSSSLTQEHRQFHYASNDQSMDWRVLDQFVGNELSHDEHFSNVVHQMKLPADGSTKPETGQESASTSISGSQIDLWK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00349 305 MobiDBLite consensus disorder prediction 284 305 - -
Vian10g00349 305 ProSiteProfiles NAC domain profile. 1 131 IPR003441 GO:0003677|GO:0006355
Vian10g00349 305 SUPERFAMILY NAC domain 2 131 IPR036093 GO:0003677|GO:0006355
Vian10g00349 305 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 233 - -
Vian10g00349 305 Pfam No apical meristem (NAM) protein 2 110 IPR003441 GO:0003677|GO:0006355
Vian10g00349 305 Gene3D NAC domain 1 135 IPR036093 GO:0003677|GO:0006355
Vian10g00349 305 MobiDBLite consensus disorder prediction 278 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00349 Vian-Chr10 3142889 3146321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00349 2 303 NAC Transcription Factor Family AT1G62700 51.075 2.24e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian10g00349 NAM 9.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00349 - - gmx:100779370 440.269