Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00347 ATGGCAACCACAGTGAGGCTTGTTTCACTGCTTCTCATGAACCTTGTAATTTACATGAGCAGCACCGCACAATGTTCCATAACCAAACACGCAGACCCTAACCCTGCAGAGTTCGTGAAGTTGTCGTGCAGGGCAACACGGTACCCTGTTTTATGTGTCCACTCGCTGATGGCCTACGCAGGCGTCATTCACCGAAGCGACCGGCAACTTGCGATGACGGCTTTGTCGGTGAGTATATCAAGGACCCGAAAATTCCTGAAGAAGATGTCGAAAGCGAGAGGCATGAAGGGTAGGGAGTGGAGAGCGGTGCAAGATTGTGTGGAGACCATTGGTGACAGCGTGGAGCGTCTCAAGCAATCGGTTAGGGAGTTGGGGCGAACGGGGTTGGGGGAAGACTTTGCATGGCACATGAGCAACGTCCAGACATGGGTTAGCGCTGCCTTAACCGACGACAACACTTGTCTCGACGGCTTTGCCGGTTCCGCCATGAACGGAAACGTGAAGAGCGATATAACGGAGAGGGTTGTCCATGTTGCTCAAGTCACTAGCAACGCTCTCGCCTTGGTTAATCGCTTTGCTTCCACCCACGCTACTCACTCTCCTTAA 606 0.5281 MATTVRLVSLLLMNLVIYMSSTAQCSITKHADPNPAEFVKLSCRATRYPVLCVHSLMAYAGVIHRSDRQLAMTALSVSISRTRKFLKKMSKARGMKGREWRAVQDCVETIGDSVERLKQSVRELGRTGLGEDFAWHMSNVQTWVSAALTDDNTCLDGFAGSAMNGNVKSDITERVVHVAQVTSNALALVNRFASTHATHSP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00347 201 SMART PMEI_2 34 188 IPR006501 GO:0004857
Vian10g00347 201 FunFam Pectin methylesterase inhibitor 1 34 192 - -
Vian10g00347 201 PANTHER PECTINESTERASE INHIBITOR-LIKE 11 188 - -
Vian10g00347 201 NCBIfam pectinesterase inhibitor domain 9 190 IPR006501 GO:0004857
Vian10g00347 201 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 192 IPR035513 -
Vian10g00347 201 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 192 IPR035513 -
Vian10g00347 201 Pfam Plant invertase/pectin methylesterase inhibitor 38 188 IPR006501 GO:0004857
Vian10g00347 201 CDD PMEI-like_3 41 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00347 Vian-Chr10 3132724 3133329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00347 33 195 Carbohydrate Esterase AT3G14310 29.412 4.07e-21 88.6