Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00344 ATGGGGAGGCAGCCTTGCTGTGACAAACTTGGAGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAAAAGCTGATAAGCTTCATTCTCACCAATGGCCAGTGCTGTTGGCGTGCTGTTCCCAAGCTTGCTGGTCTTCGCCGTTGTGGTAAGAGTTGTCGTCTTCGCTGGACTAATTATCTGAGGCCTGACTTGAAGAGAGGCCTCCTCACACAGGCAGAAGAACAGCTTGTCATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCAGGAAGAACAGACAACGAGATTAAGAATCACTGGAACACACATATAAAAAAAAAGCTCCTTAAGATGGGTATTGATCCTGTTACTCATGAACCTCTCAACAAAGAAGCCACATCACAGAATAGTTCTTTCCCTGCAGAGCATCTGTCACAAGTTGATAATATTAATATCCATCAGGTTAAGGAAAATGGTGTGGCTCTCAACTCGGAAGAGAATTCCACCTCATCACCAGCTGAAAATTCTTCTGGGGAGGAATCCCTTTTGATGGATAGCATTTGCAGTGATGTGTCTTTGATGAACAGCATGTGGCTAGATGAAACTCCTCTTATGGACACGTTATGGGACAGTACGCCTAATTTAGAGAATGAAAACTTGCCAATGTGGGAGGACAATTGCCCTTGGTTGTTGGACTGCCAGGACTTTGGTATTCATGATTTTGATTTTAATTGTTCCAGCGAGATTGAATCAAATGCACTACAAACTCTAGACTTGGACAGAAAAGAACTTTAG 798 0.4436 MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKEATSQNSSFPAEHLSQVDNINIHQVKENGVALNSEENSTSSPAENSSGEESLLMDSICSDVSLMNSMWLDETPLMDTLWDSTPNLENENLPMWEDNCPWLLDCQDFGIHDFDFNCSSEIESNALQTLDLDRKEL 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00344 265 Gene3D - 12 67 - -
Vian10g00344 265 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian10g00344 265 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Vian10g00344 265 Gene3D - 70 142 - -
Vian10g00344 265 PANTHER F14D16.11-RELATED 1 176 - -
Vian10g00344 265 CDD SANT 16 61 IPR001005 -
Vian10g00344 265 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian10g00344 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian10g00344 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian10g00344 265 SMART sant 13 63 IPR001005 -
Vian10g00344 265 SMART sant 66 114 IPR001005 -
Vian10g00344 265 FunFam MYB transcription factor 70 146 - -
Vian10g00344 265 FunFam MYB transcription factor 11 67 - -
Vian10g00344 265 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian10g00344 265 MobiDBLite consensus disorder prediction 162 182 - -
Vian10g00344 265 CDD SANT 71 112 IPR001005 -
Vian10g00344 265 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00344 Vian-Chr10 3116302 3117796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00344 1 257 MYB Transcription Factor Family AT4G12350 56.738 1.74e-101 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian10g00344 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00344 K09422 - gmx:100800360 489.96