Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00340 ATGTTACATTATTTACGGCCACATTTAAAAACCAAACTCAAACTTGGATTATTCAAACTACAGATAAAAGCACACACTCGTGTGAGCTCTCTCTCCTTCCAAATTCACACTCAAAAACCAGTTATGGAAATTCCTTGCCTTCTTTCTCTCTTTCTTCTGATTTCTTTTCTCATTCCTCGTATGGTTCTTGGAACTGCGGAGCTTAGAGCTCTGATGGAGTTGAAGTCCTCTCTGGACCCAGATGGCAAGATCCTAGCCTCGTGGATCAGTGACGGTGACCCATGCAGTGGCTTGTTCGAAGGGGTTGCGTGCAACCAGAACCAGAAAGTGGCCAACATCTCCTTGCAGGGAAAGGGTCTTTCGGGTTGGCTATCTCCAGCACTGGCTGAACTCAAATGCTTGTCAGGTTTATACTTGCATTATAACAACCTTTCTGGTGAGATACCGCCACACATTTCAAATCTCACTGATCTGGCTGATCTCTATCTCGACGTGAATAGTTTATCTGGAACTATTCCTCCTGAGCTCGGCAACATGGCTAGTCTCCAAGTGCTGCAGTTAGGTGATAACCAGTTGGTGGGGAATATACCGACACAGATGGGTTCGTTAAAGCAGCTTAGTACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCCCTTAGCTTGGGGACTCTAGAGAAGTTAAGAAGGCTAAATTTGAGCTTCAACAACTTTAATGGTACTGTTCCGGCAACACTAGCACATCTTCAACATTTGGAAGTTCTAGACGTTCAGAACAATTCTTTATCAGGAATTGTTCCTTCGGGTATTTTTGATGATGAAAATGAAGCATTGAAGAGACTTGGGGAAGGTTTCCAAGGTGCAAACAATCCGGGCTTATGTGGAGTTGAGTTTTCTAATTTGAGAGCTTGCAACAAAGATCAGAATTTAAACGTCAACCATATTGATACCTTGGATCGAGATCAACCCAAAAAGGCTCTCCCAGAGCCTGCAAATGTTCAGTTGCATTGTGATCACACCCATTGTTCAAAATCAAGGTTTCCTCAAATTGTCATCACAGTAGGTGTTATAGCTGTTACTCTTACATTCGTATGTGCTGGGTTTTTGACATTCTTCAGATACCGCCGTCAAAAGCAACGGATCAGCAATACATCAAGTTCTTCTTCTCAAGGGAAACTTAGTCCTTACCAGCCTAAAGAGTTGTACACAAAAAGTCCTTCTGCACTTGTTAATATTGAGTATTATAGTGGGTGGGATCATTTGTCTAACGGTCAAAACGCTGATGTCGGTGGGTTATTGAATGATTATCTAACTCAATTCAGGTTTAATGTGGATGAGGTTGAATCCGCAACACAGTATTTCTCGGAAGCCAGTTTACTTGGTAAGAGCAAATTCTCATCAGTTTATAAAGGAGTTATCAGAGATGGTTCTCTTGTGGCTATCAGAAGCATCAGCGTGACATGCTGTAAAACCGAGGAAGCCGAATTTGTAAAGGGGTTGAACTTACTAACCTCTCTGAGACATGAAAACCTTGTTAGGTTGAGAGGTTTTTGTTGCTCAAGGAGTAGAGGTGAATGTTTCCTTATCTATGACTTTGCCACCATGGGTAACCTTTCCCGATATCTTGACTTAGAAGATGGAAGTGACCATGTGCTCGAGTGGTCCAAAAGAGTTTCTATTATCAACGGCATTGCAAAGGGCATTGGATATCTTCATAGCAATGATGCAAGCAAACCTACAATAGTTCACCAGAACATTTCAGTGGAAAATATTCTCCTAGACAATCAGTTTAATCCATTGATCATGGATGCTGGACTACCTAAGCTTCTTGCAGATGATGTTATTTTCTCAGCTCTTAAAGTAAGTGCTGCAATGGGATACTTGGCTCCCGAATACATTACTACCGGACGATTTACTGAGAAGAGTGACATATACGCATTTGGAGTTATTATTCTTCAAGTTCTGTCTGGCAAGACGACAATAGGTAGTTCAATACGGACAGCAGTTGAGTCTTTCAGATTTGATGATTCTGTTGATGCCAATCTTAGGGGAACGTATTCAAAATCTGAAGCAGCTACACTTTCAAAGCTTGCAATACAATGTACTCATGAATCTCCTGACCAAAGACCGACGGTGGTGGATGCGATTCAGGAGTTGAGTGTGTCTTCTGCTCATTTGTAA 2187 0.417 MLHYLRPHLKTKLKLGLFKLQIKAHTRVSSLSFQIHTQKPVMEIPCLLSLFLLISFLIPRMVLGTAELRALMELKSSLDPDGKILASWISDGDPCSGLFEGVACNQNQKVANISLQGKGLSGWLSPALAELKCLSGLYLHYNNLSGEIPPHISNLTDLADLYLDVNSLSGTIPPELGNMASLQVLQLGDNQLVGNIPTQMGSLKQLSTLALQYNKLTGQIPLSLGTLEKLRRLNLSFNNFNGTVPATLAHLQHLEVLDVQNNSLSGIVPSGIFDDENEALKRLGEGFQGANNPGLCGVEFSNLRACNKDQNLNVNHIDTLDRDQPKKALPEPANVQLHCDHTHCSKSRFPQIVITVGVIAVTLTFVCAGFLTFFRYRRQKQRISNTSSSSSQGKLSPYQPKELYTKSPSALVNIEYYSGWDHLSNGQNADVGGLLNDYLTQFRFNVDEVESATQYFSEASLLGKSKFSSVYKGVIRDGSLVAIRSISVTCCKTEEAEFVKGLNLLTSLRHENLVRLRGFCCSRSRGECFLIYDFATMGNLSRYLDLEDGSDHVLEWSKRVSIINGIAKGIGYLHSNDASKPTIVHQNISVENILLDNQFNPLIMDAGLPKLLADDVIFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIILQVLSGKTTIGSSIRTAVESFRFDDSVDANLRGTYSKSEAATLSKLAIQCTHESPDQRPTVVDAIQELSVSSAHL 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00340 728 Pfam Leucine rich repeat N-terminal domain 67 105 IPR013210 -
Vian10g00340 728 SUPERFAMILY Protein kinase-like (PK-like) 438 722 IPR011009 -
Vian10g00340 728 Gene3D Ribonuclease Inhibitor 65 214 IPR032675 -
Vian10g00340 728 Pfam Leucine Rich Repeat 229 251 IPR001611 GO:0005515
Vian10g00340 728 FunFam Protein NSP-INTERACTING KINASE 2 535 725 - -
Vian10g00340 728 Gene3D Phosphorylase Kinase; domain 1 427 534 - -
Vian10g00340 728 SMART LRR_typ_2 227 250 IPR003591 -
Vian10g00340 728 SMART LRR_typ_2 179 203 IPR003591 -
Vian10g00340 728 SMART LRR_typ_2 131 155 IPR003591 -
Vian10g00340 728 SMART LRR_typ_2 251 275 IPR003591 -
Vian10g00340 728 Pfam Protein tyrosine and serine/threonine kinase 460 720 IPR001245 GO:0004672|GO:0006468
Vian10g00340 728 Gene3D Ribonuclease Inhibitor 215 281 IPR032675 -
Vian10g00340 728 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 109 721 - -
Vian10g00340 728 FunFam Protein NSP-INTERACTING KINASE 2 427 534 - -
Vian10g00340 728 Gene3D Transferase(Phosphotransferase) domain 1 537 727 - -
Vian10g00340 728 ProSiteProfiles Protein kinase domain profile. 456 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00340 728 FunFam Protein NSP-INTERACTING KINASE 2 64 213 - -
Vian10g00340 728 SUPERFAMILY L domain-like 67 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00340 Vian-Chr10 3093213 3096177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00340 46 569 Miscellaneous Gene Families AT4G22730 56.215 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vian10g00340 PK_Tyr_Ser-Thr 9.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00340 - - gmx:100797612 1158.28