Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00324 ATGAGAAGACACCGTGCTATTCATCTCTCTCATGCTCTACTGTGCACCTTTTTTTATTGTCTTGTGACAGCTTCTGCAGTGACCGAGAAGGAAATTTTGCTTGAATTCAAAGGTAACATCACGGACGATCCACGCGCCAGCTTGAGTTCGTGGGTTTCAAGTGGGAACCCGTGCAACGATTACAGAGGCGTTTCGTGTAACTCTGAAGGGTTTGTGGAGAGAATCGTGCTGTGGAACACTAGCTTGGGAGGGGTGTTATCCTCGTCACTTTCGGGGTTGAAGAGGTTGAGGATATTGACGTTGTTCGGAAACCGTCTCTCGGGTGGTATTCCAGAAGGGTATGGTGATCTTCACTCACTGTGGAAGATCAATTTGAGTTCCAATGCTTTATCTGGTTCTATCCCCGAGTTCATTGGTGATTTGCCTAGCATTCGGTTTCTAGATTTATCCAAGAATGGCTTCACTGGGGAGATACCTTCGGTTTTGTTTCGGTACTGCTACAAAACAAGGTTCGTTTCTCTTTCTCATAACAACCTCGCCGGTCCAATACCTGCCTCCTTGGTGAACTGCTTTAACCTTGAAGGGTTTGATTTCTCCTTCAACAACCTTAGTGGGGTTGTCCCTTCCGAGCTTTGTGGCATTCCAAGGTTGTCTTATGTGTCGCTGAGAAACAATGCCTTGTCAGGGAGCGTGCAGGAGCTCATTTCCTCATGCCAAAGTCTGGAACATTTGGATTTTGGAAGTAATAGGTTCACTGATTTGGCACCGTTCAGTGTCCTTGAAATGCAAAATCTTACCTATCTCAATTTATCGTATAATGGGTTTGGAGGACATATTCCTGAGATCAGTTCCTGTAGTGGGAGATTGCAAATCTTGGATGCTTCGGGGAATCTTTTAGATGGGGAGATTCCCACCAGCATAACAAAATGCAAGAGCCTAAAGCTCTTGGCGTTGGAATTGAATAGACTGGAGGGGAATATCCCAATGGATATTCAGGAACTGCGGGGACTAATTGTTATCAAATTGGGTAATAATTCCATTGGTGGAATGATCCCCAAGGGCTTTGGCAGCGTCGAGCTTCTTGAATTGCTGGATTTGCACAATCTGAACCTCGTTGGCCAAATTCCTGATGATATAAGCAATTGCAAGTTTCTTCTTGGGCTGGACCTTTCTGGTAATAAATTAGAAGGTGAGATTCCTCAGACTCTTTACAACTTGACAAACCTGGAATCCCTTAACCTACATCATAACGAGCTTAATGGAAGCATCCCCCCAAGCCTAGGAAACCTATCAAGGATTCAATACCTAGATCTTTCACATAATTCACTTTCTGGCCCAATCCCTACTTCCCTTGGAAATTTAAATAACTTGACACATTTTGATCTCTCATTCAATAATCTGTCTGGTTTCATTCCTGAGATTGCAAACATACAGCGTTTTGGTGCATCTGCATTTTCCAATAATCCTTTTCTCTGTGGTCGTCCTTTGGACACCCCTTGCTTGGTAAACGGCGCTACATCGCCTTCATCTCCTGAGAAGGCTAAAGTTCTAAGCACCTCAGCAATCGTTGCAATTGTTGCTGCAGCTGTAATTCTCACTGGGGTTTGTTTGGTGACCATCATGAATATGGCGGCACGTGGTAGAAAAAAACAGGATGATCAGATTATGATTGTTGAGAGCACCCCTCTTGGGTCAACAGAATCAAATCTTATAATTGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGTACCAAAGCATTGCTTGATAAAGAGTCTTTGATAGGTGGTGGATCAATTGGTACAGTCTACCGAACTGATTTTGAAGGCGGGATCTCAATTGCAGTGAAGAAGCTCGAGACTATGGGAAGGATTAGAAACCAGGAGGAATTTGAGCATGAAATTGGGCGACTAGGCAATCTTCAACACCCTAATTTAGTTGCTTTTCAAGGTTATTATTGGTCCTCTTCAATGCATTTGATTCTATCAGAGTTTGTCCCAAATGGGAATCTCTATGATAATCTACATGGGTTGGGCTATGCTGGAACCAGTACTAGTAGAGGAAATAGGGAATTATATTGGTCTAGAAGGTTTCAAATTGCAGTGGGAACCGCAAGAGCCCTTGCTTATCTCCACCATGACTGTAGACCTCCAATTCTTCATCTCAACATTAAATCCTCTAACATACTCCTAGATGACAAGTATGAAGCTAAGTTGTCTGATTATGGATTAGGAAAGTTACTTCCCATTTTGGATAATTATGGTTTGACCAAATTCCACAATGCTGTGGGATATGTTGCACCAGAGTTGGCTCAAGGGCTGAGGCAGAGTGAGAAATGTGATGTCTACAGTTTTGGAGTCATTCTTTTGGAGCTGGTTACAGGGAGGAAGCCTGTGGAAAGTCCAACCACAAATGAGGTGGTGGTCTTGTGTGAATATGTAAGAGGTTTGTTAGAGACTAGCTCAGCTTCAGATTGCTTTGACAGAAATTTACTGGGCTTTACTGAGAACGAATTAATTCAGGTTATGAGATTGGGACTAATTTGTACTTCGGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTCCAGGTCCTTGAGTCCATTAGAAATGGATTAGATTCCCATTAA 2658 0.4312 MRRHRAIHLSHALLCTFFYCLVTASAVTEKEILLEFKGNITDDPRASLSSWVSSGNPCNDYRGVSCNSEGFVERIVLWNTSLGGVLSSSLSGLKRLRILTLFGNRLSGGIPEGYGDLHSLWKINLSSNALSGSIPEFIGDLPSIRFLDLSKNGFTGEIPSVLFRYCYKTRFVSLSHNNLAGPIPASLVNCFNLEGFDFSFNNLSGVVPSELCGIPRLSYVSLRNNALSGSVQELISSCQSLEHLDFGSNRFTDLAPFSVLEMQNLTYLNLSYNGFGGHIPEISSCSGRLQILDASGNLLDGEIPTSITKCKSLKLLALELNRLEGNIPMDIQELRGLIVIKLGNNSIGGMIPKGFGSVELLELLDLHNLNLVGQIPDDISNCKFLLGLDLSGNKLEGEIPQTLYNLTNLESLNLHHNELNGSIPPSLGNLSRIQYLDLSHNSLSGPIPTSLGNLNNLTHFDLSFNNLSGFIPEIANIQRFGASAFSNNPFLCGRPLDTPCLVNGATSPSSPEKAKVLSTSAIVAIVAAAVILTGVCLVTIMNMAARGRKKQDDQIMIVESTPLGSTESNLIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYRTDFEGGISIAVKKLETMGRIRNQEEFEHEIGRLGNLQHPNLVAFQGYYWSSSMHLILSEFVPNGNLYDNLHGLGYAGTSTSRGNRELYWSRRFQIAVGTARALAYLHHDCRPPILHLNIKSSNILLDDKYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQGLRQSEKCDVYSFGVILLELVTGRKPVESPTTNEVVVLCEYVRGLLETSSASDCFDRNLLGFTENELIQVMRLGLICTSEDPLRRPSMAEVVQVLESIRNGLDSH 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00324 885 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 674 884 - -
Vian10g00324 885 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 26 164 - -
Vian10g00324 885 FunFam Putative LRR receptor-like serine/threonine-protein kinase 574 673 - -
Vian10g00324 885 Gene3D Ribonuclease Inhibitor 26 164 IPR032675 -
Vian10g00324 885 SUPERFAMILY L domain-like 164 492 - -
Vian10g00324 885 CDD STKc_IRAK 603 878 - -
Vian10g00324 885 Pfam Protein kinase domain 599 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00324 885 SUPERFAMILY L domain-like 72 160 - -
Vian10g00324 885 SUPERFAMILY Protein kinase-like (PK-like) 598 876 IPR011009 -
Vian10g00324 885 Gene3D Transferase(Phosphotransferase) domain 1 678 884 - -
Vian10g00324 885 Pfam Leucine Rich Repeat 433 454 IPR001611 GO:0005515
Vian10g00324 885 Pfam Leucine Rich Repeat 408 430 IPR001611 GO:0005515
Vian10g00324 885 SMART LRR_typ_2 262 285 IPR003591 -
Vian10g00324 885 SMART LRR_typ_2 406 430 IPR003591 -
Vian10g00324 885 SMART LRR_typ_2 93 117 IPR003591 -
Vian10g00324 885 SMART LRR_typ_2 454 476 IPR003591 -
Vian10g00324 885 SMART LRR_typ_2 141 165 IPR003591 -
Vian10g00324 885 PANTHER OS05G0588300 PROTEIN 202 333 - -
Vian10g00324 885 Gene3D Phosphorylase Kinase; domain 1 597 677 - -
Vian10g00324 885 ProSiteProfiles Protein kinase domain profile. 597 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00324 885 Pfam Leucine rich repeat 240 299 IPR001611 GO:0005515
Vian10g00324 885 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Vian10g00324 885 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Vian10g00324 885 Gene3D Ribonuclease Inhibitor 165 503 IPR032675 -
Vian10g00324 885 ProSiteProfiles Leucine-rich repeat profile. 240 261 IPR001611 GO:0005515
Vian10g00324 885 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 165 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00324 Vian-Chr10 2939816 2942559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00324 12 884 Receptor kinase-like Gene Family AT1G62950 64.189 0.0 1103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vian10g00324 Pkinase 4.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00324 - - gmx:100805681 1558.5