Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00316 ATGGCTTCAACTCTTCAAGCTTTTGCTTTTACAATGAAGTTCATGTTCATTCTGATGTTCATGCGAGAGCAAGCAACAGCTGCGGGGATATTTCGACCCAGTCAATGGGCTCTCGCCCATGCCACCTTTTACGGTGATGAGACTGCTTCTGCCACTATGGGAGGAGCATGCGGGTACGGGAATTTATTTCAAAATGGTTACGGGACAGACACGGCGGCTCTAAGTTCTACGTTGTTCAACAATGGTTATGCGTGTGGAACTTGTTATCAAATAAAGTGTTACCAATCAAGTGCGTGTTATAAGAACGTAGCCTTTACGACGGTGACCGCCACCAATCTTTGCCCTCCTAACTGGGCGCAACCCTCCGATAACGGCGGCTGGTGCAACCCACCACGAGTTCATTTTGACATGGCCAAACCCGCTTTCATGAAGATTGCGCAGTGGAAAGCCGGCATCGTCCCTGTTATGTACCGCAGAGTGGCATGTGTAAGGAAGGGAGGGGTTCGATTCTCTTTTCAAGGAAACGGATACTGGCTATTGGTGTATGTGATGAACGTGGGAGGTGGAGGAGATATTTCGAGCATGTCGGTGAGAGGAAGCAGAAGTGGATGGATCAGCATGAGCCATAACTGGGGTGCTTCATATCAAGCATTTGCAACTCTTGCTGGCCAAGCTCTTTCTTTCAGGATTACTTCATACACCACCAAGGAAACTATAATTGCATGGAATGTTGCTCCTTCAAACTGGAACGTCGGACTCACATATTCCACCACTGTTAACTTCCGCTGA 789 0.4804 MASTLQAFAFTMKFMFILMFMREQATAAGIFRPSQWALAHATFYGDETASATMGGACGYGNLFQNGYGTDTAALSSTLFNNGYACGTCYQIKCYQSSACYKNVAFTTVTATNLCPPNWAQPSDNGGWCNPPRVHFDMAKPAFMKIAQWKAGIVPVMYRRVACVRKGGVRFSFQGNGYWLLVYVMNVGGGGDISSMSVRGSRSGWISMSHNWGASYQAFATLAGQALSFRITSYTTKETIIAWNVAPSNWNVGLTYSTTVNFR 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00316 262 Gene3D - 22 162 IPR036908 -
Vian10g00316 262 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Vian10g00316 262 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Vian10g00316 262 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Vian10g00316 262 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Vian10g00316 262 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Vian10g00316 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Vian10g00316 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Vian10g00316 262 SUPERFAMILY Barwin-like endoglucanases 35 185 IPR036908 -
Vian10g00316 262 CDD DPBB_EXPA_N 35 162 - -
Vian10g00316 262 Pfam Lytic transglycolase 71 157 IPR009009 -
Vian10g00316 262 SMART dpbb_1 71 157 IPR007112 -
Vian10g00316 262 Gene3D - 167 262 IPR036749 -
Vian10g00316 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 167 IPR007112 -
Vian10g00316 262 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Vian10g00316 262 Pfam Expansin C-terminal domain 168 246 IPR007117 -
Vian10g00316 262 PANTHER EXPANSIN-A15 14 257 IPR002963 GO:0009664
Vian10g00316 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Vian10g00316 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Vian10g00316 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Vian10g00316 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Vian10g00316 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Vian10g00316 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Vian10g00316 262 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00316 Vian-Chr10 2896535 2897508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00316 1 262 Expansin Gene Family AT1G12560 65.399 2.74e-128 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00316 - - gmx:100798322 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00316 10 2896535 2897508 Vian10g00316 10 2896535 2897508 ECH
Vian1g01332 1 14461689 14462652 Vian10g00316 10 2896535 2897508 PCT