Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00311 ATGGCTCATTTGCTTTATGGTGAAACTCCATCTTTTGGAGCTTCCCACCATGGACAGGCTCAGCAAACTATTCCGTTTCCAACCACTGGAACTTCCTTAAGGATTCTGCTCTTACATGGCAACTTGGAAATATGGGTCAACGAGGCCAAAAACCTTCCTAACATGGACATTCTTCACAAGAAAACGGGAGAAATGGTTTCCATGCTGTCCCGAAAACTTGGCGGCAAAGTCGAAGGCATCATGTCCAAAACAGGAACCAGTGATCCCTATGTTACGGTGTCTGTGGCGGGTGCTGTGATTGCCAGAACTTTTGTCCTCAGGAACATGGAGAACCCCGTTTGGACGCAGCGTTTCTACGTCCCCGTTGCACACCTTGCTTCTGAAGTCCACTTCGTTGTAAAGGACAGTGATATTGTGGGTTCTCAGATAATTGGAGTAGTGGGAATTCCGGTGGAACAGTTATGTAGTGGCACAAGAGTTGAGGGCTTTTTCCCTCTCCTTAGTACTAATGGAAAACCATGCAAGGGTGGAGCAAAGTTGAGTTTATCCATTCAGTACACCCCTGTTGAAAAGGTGCCTCTTTATAGCCATGGAGTAGGTGCTGGTCCTCATTACGAAGGGGTCCCTGACACATACTTTCCCCTTAGAAAAGGTGGAAAAGTTACACTTTATCAAGATGCTCATGTTCGTGAAGGGTGCCTTCCCAGTTTGAAAATGGATGGGGATGTGAATTATAAGCATGAAAGTTGTTGGCACGACATCTTTGATGCAATAAATCAGGCTCGTCGATTGGTTTATATTGTTGGGTGGTCCGTGTACTACAATGTTAGTCTCATTCGGGATAAGGGTGATGGAAAGGCTTACACTTTAGGTGACCTTCTCAAAGCTAAATCACAGGAAGGTGTCAGAGTGCTGCTCCTTGTATGGGATGATCCCACTTCTGGAAGCTTGCTTGGTCATAAAACGGTTGGACTTATGAACACTCATGATGAGGACACTCGCCAGTTTTTCAAGCATTCTTCGGTACAGGTGCTTCTTTGCCCACGAGCTGGTGGAAAGGGACACAGCTTTCTCAAAACGCAGGAAGCTGGAACAATCTATACCCATCATCAGAAGACAGTCATTGTAGACGCTGATGCAGGTCACAATAAAAGAAAGATAAAAGCTTTCATCGGAGGTCTTGATTTATGTGTGGGTCGATATGATACCCCAGACCATTCCCTCTTCAGAACTTTGCAGACAACACACAAAGATGACTACCATAATCCTAACTTTGAGGGGCCTGTCACTGATTGTCCTAGACAACCATGGCATGATTTGCATTCCCAAGTTGATGGGGCAGCAGCATACGACATCCTCACCAATTTCGAGGAGCGTTGGTTGAGGGCTTTGAAAATGCATAGATTACGAAAGATGAAAAGTTCGCATGATGATTCACTACTTAAAATTGACAGAATCGCTGACATTGTTGGCATTGATAATGTTCCTTGCCTAAATGAAGAAAACCAGGAGACTTGGCATACCCAGATCTTCCGATCAATTGATTCCAATTCTGTGAAAGGATTTCCAAAGGAATCACAAGATGCTATAAAAAGGAACTTGGTTTGTGGGAAGAATGTACTGATAGACATGAGCATACATTCTGCTTATGTCAAGGCAATTCGATCGGCCCAAAAGTTCATCTATATTGAGAACCAATACTTTCTTGGCTCATCGTATAACTGGGATTCTTACAAAGACCTCGGTGCAAACAACTTAATTCCAATGGAGATTGCATTAAAAATAGCCAGTAAAATCAAACAGCATGAGAGATTCTCCGTGTATATTGTCATTCCTATGTGGCCTGAAGGAGTACCTAAAAGTACAGCTACTCAAAGGATTCTCTTTTGGCAGTTCAAAACAATGCAAATGATGTATGAAACGGTTTACAAGGCCTTACAGGAGGCTGGGCTTGACAATCAGTATGAACCACAGGACTACTTGAATTTCTTTTGCCTTGGTAATCGTGAGATCCCTGACAACCAAAATGTTTCAAAAACTACCGGAGAAAACATACCACAGGCACTCACTAAAAAGAACAAAAGATTCATGATTTATGTTCATTCAAAAGGGATGATAGTGGATGATGAATATGTGTTACTGGGGTCTGCAAACATCAACCAGAGATCCATGGAAGGCACCAGAGATACAGAAATAGCAATGGGGGCATATGAGCCTAATCACACTTGGGCAAAGAAGCAATCTAGACCACGTGGACAGGTGCATGGTTATAGAATGTCACTGTGGAGCGAACATATAGGAAGTGTGGAAGAATGTTTTGAGGAGCCAGAGAGGCTTGAGTGTGTGAGACGCATAAGGTCATTGAGTGAGAGTAACTGGAGACAGTATGCAGCAGATGAGGTAACTGAAATGAAAAGCCATTTACTAAAATATCCGCTTGAAGTTGATTCAAAGGGTAATGTGAAGCCTCTTTCTGGCTGTGAGACATTTCCAGACGTTGGTGGGAACATAAGTGGCACTGTCACAGTACTCAGAGAAAATCTCACCATCTGA 2553 0.434 MAHLLYGETPSFGASHHGQAQQTIPFPTTGTSLRILLLHGNLEIWVNEAKNLPNMDILHKKTGEMVSMLSRKLGGKVEGIMSKTGTSDPYVTVSVAGAVIARTFVLRNMENPVWTQRFYVPVAHLASEVHFVVKDSDIVGSQIIGVVGIPVEQLCSGTRVEGFFPLLSTNGKPCKGGAKLSLSIQYTPVEKVPLYSHGVGAGPHYEGVPDTYFPLRKGGKVTLYQDAHVREGCLPSLKMDGDVNYKHESCWHDIFDAINQARRLVYIVGWSVYYNVSLIRDKGDGKAYTLGDLLKAKSQEGVRVLLLVWDDPTSGSLLGHKTVGLMNTHDEDTRQFFKHSSVQVLLCPRAGGKGHSFLKTQEAGTIYTHHQKTVIVDADAGHNKRKIKAFIGGLDLCVGRYDTPDHSLFRTLQTTHKDDYHNPNFEGPVTDCPRQPWHDLHSQVDGAAAYDILTNFEERWLRALKMHRLRKMKSSHDDSLLKIDRIADIVGIDNVPCLNEENQETWHTQIFRSIDSNSVKGFPKESQDAIKRNLVCGKNVLIDMSIHSAYVKAIRSAQKFIYIENQYFLGSSYNWDSYKDLGANNLIPMEIALKIASKIKQHERFSVYIVIPMWPEGVPKSTATQRILFWQFKTMQMMYETVYKALQEAGLDNQYEPQDYLNFFCLGNREIPDNQNVSKTTGENIPQALTKKNKRFMIYVHSKGMIVDDEYVLLGSANINQRSMEGTRDTEIAMGAYEPNHTWAKKQSRPRGQVHGYRMSLWSEHIGSVEECFEEPERLECVRRIRSLSESNWRQYAADEVTEMKSHLLKYPLEVDSKGNVKPLSGCETFPDVGGNISGTVTVLRENLTI 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00311 850 FunFam Phospholipase D delta 241 479 - -
Vian10g00311 850 Pfam Phospholipase D Active site motif 366 400 IPR001736 GO:0003824
Vian10g00311 850 Pfam Phospholipase D C terminal 770 840 IPR024632 -
Vian10g00311 850 PANTHER PHOSPHOLIPASE D 32 839 IPR015679 -
Vian10g00311 850 SUPERFAMILY Phospholipase D/nuclease 531 779 - -
Vian10g00311 850 Pfam PLD-like domain 551 732 IPR025202 -
Vian10g00311 850 CDD C2_plant_PLD 36 187 - -
Vian10g00311 850 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 38 189 IPR035892 -
Vian10g00311 850 PIRSF PLD_plant 28 850 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vian10g00311 850 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 365 400 IPR001736 GO:0003824
Vian10g00311 850 SMART pld_4 365 400 IPR001736 GO:0003824
Vian10g00311 850 SMART pld_4 696 723 IPR001736 GO:0003824
Vian10g00311 850 Gene3D Endonuclease Chain A 236 484 - -
Vian10g00311 850 SMART C2_3c 41 163 IPR000008 -
Vian10g00311 850 FunFam Phospholipase D 513 742 - -
Vian10g00311 850 Gene3D Endonuclease Chain A 507 749 - -
Vian10g00311 850 Gene3D C2 domain 35 186 IPR035892 -
Vian10g00311 850 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 696 723 IPR001736 GO:0003824
Vian10g00311 850 Pfam C2 domain 40 166 IPR000008 -
Vian10g00311 850 SUPERFAMILY Phospholipase D/nuclease 205 465 - -
Vian10g00311 850 ProSiteProfiles C2 domain profile. 16 164 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00311 Vian-Chr10 2849750 2853893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00311 32 850 Phospholipase D Gene Family (Wang group) AT2G42010 66.745 0.0 1227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00311 K01115 - gmx:100786241 1580.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00311 10 2849750 2853893 Vian10g00311 10 2849750 2853893 ECH