Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00306 ATGGCTCCCTCACTCTCTTCCAAGAAGCACCCACTCTACCGAGGAATCCGTTCCCGGGGAAGAAAATGGGTCTCCGAAATCCGCGAGCCGCGCAAGGCCTCCCGCATATGGCTCGGCACCTTCCCCAAGCCGGAGATGGCCGCCGCCGCCTACGACGTCGCAGCATTGGCCTTGAAAGGCGACGGCGCTGTTCTCAACCTCCCTCACTCCGTTTCCAAGTATCAAATCCCTGCAACCAACTCTGCGGCGGATATCCGCACTGCTGCCTCCGCTGCGGCCGCAATGATGAAGGCTGAAATTGAAGCTTCCCACAACATTGCATCACAAACTGAAACTACCCACATCGATGCGACAACCTGGAGGTTTGAAAATGATTTCCTTGACGAGGAAGCCATTTTCGGCATGCCAAGTCTTCTGGTTGACATGGCCGGAGGAATGCTTCTGTCGCCGCCCAGAATGAGCCCGCCACCGTCCGATAACTCGCCGGAGAAACAAGCTGCAGAGACTTTGTGGAGTTATTTTTGA 525 0.56 MAPSLSSKKHPLYRGIRSRGRKWVSEIREPRKASRIWLGTFPKPEMAAAAYDVAALALKGDGAVLNLPHSVSKYQIPATNSAADIRTAASAAAAMMKAEIEASHNIASQTETTHIDATTWRFENDFLDEEAIFGMPSLLVDMAGGMLLSPPRMSPPPSDNSPEKQAAETLWSYF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00306 174 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Vian10g00306 174 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Vian10g00306 174 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Vian10g00306 174 MobiDBLite consensus disorder prediction 149 168 - -
Vian10g00306 174 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Vian10g00306 174 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 173 IPR045277 GO:0003700
Vian10g00306 174 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Vian10g00306 174 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00306 Vian-Chr10 2777812 2778336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00306 7 173 AP2-EREBP Transcription Factor Family AT5G52020 53.143 9.67e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian10g00306 AP2 6.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00306 - - gmx:100811020 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00306 10 2777812 2778336 Vian10g00306 10 2777812 2778336 ECH
Vian1g01320 1 14297907 14298449 Vian10g00306 10 2777812 2778336 PCT