Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00298 ATGAACGGCTGCGAGGAGAGAGAAACTACAGCGTTCCGAGCTCTGGCGAATCGGTGCCGGAGCCTCGAGGAGAAGCAGGCCAAGCTGAAGGAGGAATTCGATGAGCTACTGCAGAAGAAGCTCACAGTCAGGCACGATAACGATAGCGAGAACAATAACGAGGTCATTGCTGATTCAACAACCCTCGGTTTTCTCTCCGGTTACTTCTTCTCCGGAAGTCCTTACGCAACCCTGCTGAAATGTATGGGCCACGCCGTTCACGTCGTCAGAGTTCCCTCCGCTGAGATCGTGTACTGGAATCACACGGCCGAAACTCTGTATGGATGGAAAGACTACGAAATCATTGGCCAAAGAGTAACTAAAATCCTAACTGCTCAGGAAAATTATGTATCTCTACAAAAAATTCTGGAAAGGGTGGTTTCAGGAGTTCCATGGTCTGGGAAGTTTCCTTTCAAAAAGAAATCTGGTGAAGTAATTATGGCATTGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTAACTGGTGTTATAACTGTTTCAAGTGATGCGGCTATATTAAAATGTACAAATTCAGAAAATCAAACATACAAATCTGCTAACAATGGCCAACCTGGAGTACAGAGGTTAAACTTTAAAAGAATTCAGTGGCCTCCACGACCAACGATTGCACCAATGCCACAGATTGCTTCATCTGTTTCCAATCTGGCATCAAAGCTTCTCCCACTGCTGCGTAGTACTGATGGCACAGTTTCCAAGAAGACTTCAACGGATGCTGTCGCAGGTGATGAAAAGCTAGAGAAGCGTGGCATATATGAAACAAAACCTAATTCCAGACATTTCCGTAAAGAAAACACAATTGTTATGGAGGCCTCTGAGGAGAATGAGTCTACTGCAGAATTTGGCCAACCTTCTAAAATTGCAGCCAAGCTTCAAACTGGGGTACGTGCAAAATATGGGAAGGATAATGGAAAAATGAAAAATAATTGTGCAGATGATAATTCAGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAAAGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACAAAATCTTCAGAAACGTAATTCTTCAGTTGCAATGAAGAGAGCGGAAATAACAGCGTGTGCATCTAGAGCTTCCACTGTTTCCAAAGATTATTCTGAGGCTACGACTATGGTGACAGGAGATGAAGTACAAAAGCAGCAAGAAGTGTCGCAACTGCCAACTTCGAGGCAGAGTACAGGCAGCCACGAAAGATTGTCGGGCAAAGGGGATTATGAGTCAAACTCTGTTTCAGAGTGTGAAATCCATTGGGAAGACCTTCAATTAAGAGAGGAGATTGGACAAGGTTCTTATGCAACTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAGTCAAGGTTTATTTTGGGAACGGATACACAGAGGAGACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTACTACTTTTCATGGGAGCAGTATATTCACAGGAAAGGCTTGCCATTGTTACAGAGTTATTACCTAGGGGAAGTCTTTTCAAAAATCTACATAGGAACAATCAGACATTAGACATCAGAAGACGTCTAAGGGTGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATCGAGATCTGAAGTCTTCCAACCTGCTTGTAGATAAAAACTGGACTGTTAAGGTTGGAGATTTTGGCCTGTCTAGGTTGAAGGATGCAACTTTATTAAATACGAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAAGTCCTTAGAAATGAACCTTCCAATGAGAAGTCTGATGTATTCAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCCTGGAAAAATTTTGAATTCCTTACAGGTTGTTGGAGTCGTAGGCTTTATGGACAGACGACTGGACCTTCCAGAGGACCTTGA 2028 0.4246 MNGCEERETTAFRALANRCRSLEEKQAKLKEEFDELLQKKLTVRHDNDSENNNEVIADSTTLGFLSGYFFSGSPYATLLKCMGHAVHVVRVPSAEIVYWNHTAETLYGWKDYEIIGQRVTKILTAQENYVSLQKILERVVSGVPWSGKFPFKKKSGEVIMALVTKTPLYEDGELTGVITVSSDAAILKCTNSENQTYKSANNGQPGVQRLNFKRIQWPPRPTIAPMPQIASSVSNLASKLLPLLRSTDGTVSKKTSTDAVAGDEKLEKRGIYETKPNSRHFRKENTIVMEASEENESTAEFGQPSKIAAKLQTGVRAKYGKDNGKMKNNCADDNSGSNRMNYENDSSGGLVPLKGYQDVVNGADKEQNLQKRNSSVAMKRAEITACASRASTVSKDYSEATTMVTGDEVQKQQEVSQLPTSRQSTGSHERLSGKGDYESNSVSECEIHWEDLQLREEIGQGSYATVYHGIWNGSDVAVKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKNLHRNNQTLDIRRRLRVALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLNTKSGRGTPQWMAPEVLRNEPSNEKSDVFSFGVILWELMTQSIPWKNFEFLTGCWSRRLYGQTTGPSRGP 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00298 675 Gene3D Phosphorylase Kinase; domain 1 445 529 - -
Vian10g00298 675 ProSiteProfiles Protein kinase domain profile. 452 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00298 675 NCBIfam PAS domain S-box protein 93 183 IPR000014 -
Vian10g00298 675 Gene3D PAS domain 71 203 - -
Vian10g00298 675 Gene3D Transferase(Phosphotransferase) domain 1 530 665 - -
Vian10g00298 675 Pfam PAS domain 92 183 IPR000014 -
Vian10g00298 675 CDD STKc_MAP3K-like 458 654 - -
Vian10g00298 675 SUPERFAMILY PYP-like sensor domain (PAS domain) 93 183 IPR035965 -
Vian10g00298 675 CDD PAS 95 183 IPR000014 -
Vian10g00298 675 ProSitePatterns Protein kinases ATP-binding region signature. 458 479 IPR017441 GO:0005524
Vian10g00298 675 FunFam Serine/threonine-protein kinase isoform 1 443 530 - -
Vian10g00298 675 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 261 651 - -
Vian10g00298 675 Coils Coil 12 39 - -
Vian10g00298 675 ProSiteProfiles PAS repeat profile. 93 143 IPR000014 -
Vian10g00298 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Vian10g00298 675 MobiDBLite consensus disorder prediction 404 438 - -
Vian10g00298 675 MobiDBLite consensus disorder prediction 404 428 - -
Vian10g00298 675 SMART serkin_6 452 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00298 675 MobiDBLite consensus disorder prediction 319 339 - -
Vian10g00298 675 Pfam Protein tyrosine and serine/threonine kinase 452 650 IPR001245 GO:0004672|GO:0006468
Vian10g00298 675 SUPERFAMILY Protein kinase-like (PK-like) 435 655 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00298 Vian-Chr10 2710176 2715675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00298 8 650 MAP Kinase Kinase Kinase AT4G23050 42.898 9.47e-164 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vian10g00298 PK_Tyr_Ser-Thr 4.7e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00298 - - vra:106777922 1232.62