Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00297 ATGGGTAAGGCATCCAAATGGTTTCGCGCCATTCTTGCTCTCAAAAGACCAGACTCGCCGTCCGCCACCGCTCCCAAACCGCCCAAGGACAAACGACGGTGGAGCTTCGTCAAATCCTACAGAGAAAAGGACCATTCCACCGTCGACCACTCCTCGGTACACGCGGAAAGCGCTGATCCCAACCTTCCAGCACTCACCGCCGTCACCGTCCTCGGAGGCGTTACTCGAGAAGAATGGGCAGCCGTTAAGATTCAAGCCGCGTTTCGAGGCTCTTTGGCAAGGAAAGCCCTTAGAGCGTTAAAAGGATTGGTGAAGCTACAGGCATTAGTGAGAGGTGAGATAGAAAGAAAGCGAACGTCAGAATGGCTGCAAAGAGTACAAACACTCTTACGTATCCAGGCCCAGGCCCAGGCCCAGTTCCGTGTTGGGCGGGCCCAAACTTTTCACTCCCCTTATTTGAATGCAAACTCATCCACTGCCCACCTACATGGTTCACCAGACAAATCTGAAAGCCCCATCAGCTCCGAGAGCATGAAATATGATCACTCACCTTCATTACTCAAGAGAAACAGCTCAAAGTCCCGCATGCATATCAATGTTAACGAAGACAAATCATGGCATGAACGAAGATGGTGGTCAAGAGCTTGTAGCCTGGACGAAGAAGGATGTGTGAGGATTCTAGAAAATGATTCTGTAAAAGCACACGTGCCATCAAAGGGTAGAAGCCATGGTTTGGTTAGTGAAGTTCAGTCTTACAGCCCTCGAAAATGGAACGAGGTTGAGGACAACTCATCGTGTGGTGCTGACAATAGTCCTCGTACTTTGTCCTCTTCTTCTAAAAATGGTGGCTCCAAAAGAAGCCCTTTTACTCCTACCAAGAGCCATCTGAGTGGTTGTTCTGAACCTGATTATCCGAGTTACATGGCATACACTGAATCATCAATGGCAAAGGTAAGATCTGTGAGTGCTCCAAAGCAGAGGCCCACCCAATACATGAGGTCAAGTTCATCTTCTAACAGCTACTCGCTTCATGATAATGGATTTCAATTTGGTGACTCAAAGTTGGCCACTCAAAGGGTAGCATCATCATCACACGCAAACTTCACTAACAAGGCTTACCCTGCTTCTGGTCGTTTGGACAAGCCTGGGTTATCTGTGCCGTATTATAAATACTGA 1176 0.483 MGKASKWFRAILALKRPDSPSATAPKPPKDKRRWSFVKSYREKDHSTVDHSSVHAESADPNLPALTAVTVLGGVTREEWAAVKIQAAFRGSLARKALRALKGLVKLQALVRGEIERKRTSEWLQRVQTLLRIQAQAQAQFRVGRAQTFHSPYLNANSSTAHLHGSPDKSESPISSESMKYDHSPSLLKRNSSKSRMHINVNEDKSWHERRWWSRACSLDEEGCVRILENDSVKAHVPSKGRSHGLVSEVQSYSPRKWNEVEDNSSCGADNSPRTLSSSSKNGGSKRSPFTPTKSHLSGCSEPDYPSYMAYTESSMAKVRSVSAPKQRPTQYMRSSSSSNSYSLHDNGFQFGDSKLATQRVASSSHANFTNKAYPASGRLDKPGLSVPYYKY 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00297 391 PANTHER IQ-DOMAIN 5-RELATED 1 344 - -
Vian10g00297 391 ProSiteProfiles IQ motif profile. 77 105 IPR000048 GO:0005515
Vian10g00297 391 MobiDBLite consensus disorder prediction 156 181 - -
Vian10g00297 391 Pfam IQ calmodulin-binding motif 79 98 IPR000048 GO:0005515
Vian10g00297 391 ProSiteProfiles IQ motif profile. 101 128 IPR000048 GO:0005515
Vian10g00297 391 MobiDBLite consensus disorder prediction 319 340 - -
Vian10g00297 391 Gene3D - 75 128 - -
Vian10g00297 391 Pfam Protein of unknown function (DUF4005) 271 358 IPR025064 -
Vian10g00297 391 SMART iq_5 76 98 IPR000048 GO:0005515
Vian10g00297 391 MobiDBLite consensus disorder prediction 256 300 - -
Vian10g00297 391 MobiDBLite consensus disorder prediction 256 299 - -
Vian10g00297 391 MobiDBLite consensus disorder prediction 156 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00297 Vian-Chr10 2706297 2708610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00297 1 49 IQD Protein Family AT4G23060 44.643 2.97e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00297 - - vra:106777320 588.956