Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00293 ATGATGACGCCATTACCGGTGGAGCAAACCGGTGAATCAGCGCCGGCGGAGTCACAGAGATCTATTCCGACGCCGTTTCTGACGAAGACGTACCAGCTCGTGGATGATCCCTCCGCGGATGACCTAATTTCCTGGAACGAAGATGGCACGAGTTTCATCGTTTGGCGGCCTGCGGAATTCGCACGTGATTTGCTTCCGAAGTACTTCAAACACAACAACTTTTCCAGTTTTGTCCGTCAGCTAAACACCTATGTAACCACTCCGCGCGAGCTCGTTTTATTATTCTCTATTATCGAATATTTTAAAGATAAATTACCGGTGTTTGTGTGTTGTTATGTGCAGGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGACTGTTTCCGGCGAGGTGAGAGAACTCTGCTCCGGGACATACAACGCCGGAAAATATTACCGGTGCCACCAACTGCGCAACCTGCAGTGGCCACAGCCAATACTGTGACGGTTGCTGTGGCGGCACCGGCGATCAGAACGGTGTCTCCGACGACTTCCGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTGGAAATAATAATAATACAGTGCACCGCACCACGAGTTGCACCACTACGCCCGAGCTGTTAGAAGAAAATGAAAGGCTTAGAAAAGAGAACATGCAACTGAATCACGAGTTGAGTCAATTGAAGAGTTTGTGTAATAACATACTCGCTTTGATGACCAATTACGCTTCTGGTTTTAGCCGTCAGCAGTTAGAATCGTCCACTAGTGCTGTGAGGACCGTGCCGGTGCCGGAAGGGAAGGCTCTGGAGCTTTTGCCTGCGAAGCATGTTTCGTCAGCTGATGACGCCATGCATGGTGGCGCTGCCGGCTTAGGGCCGTGTACGAATGCGAATGCAGCGGAGGCAGAGGTTCCCAAGCTGTTTGGGGTTTCTATTGGGTTAAAACGGTGTAGGACAGAGTGCGAGGCCGAACCGGAGGTAGAAGAACAGAATCAAATGCAAACGCGAGCTCAGGCACAAACACAGACACAGTCCTCTCAAGAACCAGATGGCGGGCCAGATGTGAAATCTGAACCGCTTGATGGGGATGAGTCGGATGATCAGGATCCTCGGTGGCTGGAGCTTGGGAAATAA 1155 0.5108 MMTPLPVEQTGESAPAESQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYVTTPRELVLLFSIIEYFKDKLPVFVCCYVQGFRKVVPDRWEFANDCFRRGERTLLRDIQRRKILPVPPTAQPAVATANTVTVAVAAPAIRTVSPTTSGDEQVLSSNSSPIAGNNNNTVHRTTSCTTTPELLEENERLRKENMQLNHELSQLKSLCNNILALMTNYASGFSRQQLESSTSAVRTVPVPEGKALELLPAKHVSSADDAMHGGAAGLGPCTNANAAEAEVPKLFGVSIGLKRCRTECEAEPEVEEQNQMQTRAQAQTQTQSSQEPDGGPDVKSEPLDGDESDDQDPRWLELGK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00293 384 Gene3D - 18 146 IPR036388 -
Vian10g00293 384 MobiDBLite consensus disorder prediction 179 206 - -
Vian10g00293 384 Coils Coil 211 238 - -
Vian10g00293 384 MobiDBLite consensus disorder prediction 1 20 - -
Vian10g00293 384 FunFam Heat stress transcription factor B-4 18 90 - -
Vian10g00293 384 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 343 IPR027725 -
Vian10g00293 384 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00293 384 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00293 384 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00293 384 MobiDBLite consensus disorder prediction 331 384 - -
Vian10g00293 384 SUPERFAMILY "Winged helix" DNA-binding domain 23 145 IPR036390 -
Vian10g00293 384 SMART hsfneu3 22 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00293 384 Pfam HSF-type DNA-binding 26 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00293 384 MobiDBLite consensus disorder prediction 335 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00293 Vian-Chr10 2682770 2683924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00293 17 384 HSF AT4G11660 47.273 2.03e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian10g00293 HSF_DNA-bind 3.6e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00293 K09419 - gmx:100791020 552.362