Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00280 ATGGGTGAGAAGTTAGAAGGTTGGGAGTGCAGTAGCAGTTTCCAGTGCTGTGGAAATTTGTGGCCTAAGGCACACTATCCTTCGATGACGGCGGTGGAAGCGGGAAAGACGGTGGCGGAATTAGAAGGATCAGAGAGCAAAGTGGTTTTGTTCGGCGTTACGGGAATGACGTGTGCTGCGTGCGCCGGATCCGTTGAGAAAACCATCAAACGCTTACCTGGAATCCGAGAGGCCGTTGTTGATGTCTTGAATCATAAAGCTCAGGTTCTTTACTTTCCTTCAATGGTTAACGAGGAGAGGATACGCGAGGCCATTGAAGACGCTGGATTTGAAGCCAAAGTTATTGAAGAAGACTCCAACTACACCTCAACTCAAATATGCCGCATACACATACGAGGCATGACTTGTACCTCTTGCTCCTCCACTATCGAATCAGCTCTACAATCCCTTCGTGGGGTGCACAAGGCACGAGTGGCCTTAGCAACAGAAGAAGCAGAAGTCCACTATGACCCCAAAATCCTCACCCACAACTACCTAATGGAAGCTATACAAGGCACCGGGTTCGAAGCCATACTAATAAGCACAGGGGAACACATGAGCAAGATTGAACTTAAAATTGATGGCATTAAAAACGACCAATCCCTTGGTGCCATTGAGCGCTCTCTCCGTTCATTCCCTGGTGTTGAAACCATAGACATATATCCGGACATTAACAAAATTGCCATAACTTACATACCACACATGACAGGACCAAGAACCTTCATAGAAGTCATAGAATCCACTGGATCAGGGTGTTTTAAAGCGGTGATATTTCCAAACGATGAAGGAAGAGAAGCACTTAGACAACAGGAAATTAACCGATACTTCAAGCTTTTCATATGGAGTCTAGCTTTTACCATTCCTGTTTTCTTGACATCCATGGTCCTCATGTATATACCTGGAGTTAAACGTGTTTTGGATGTCAAAATTGTTAATATGTTGAATATTGGACTTCTCTTGAGGTGTGACTTTGCTACCCCGGTGCAGTTTATCATAGGTAGACGGTTCTATGTTGGGGCATATAAAGCGTTGCGCAAGGGTTCTGCTAACATGGATGTGTTGATAGCATTAGGGACAAATGCAGCATATTTCTATTCTCTCTATGTTGTGGAAAGATCTGTTTTCTCTCGGCATTTCAAAGGAAACGATTTCTTTGAGACCAGCTCTATGCTTATTTCTTTTATTCTGTTGGGTAAGTATTTAGAAGTGTTAGCAAAGGGGAAGACATCTCAGGCGATTGCAAAGCTTATGAACTTGACACCTGAGACAGCGACCTTGTTAACTCAAGATGATAAGGGGGATGTTGTTAGTGAAAAACAAATTGATATTCGGTTGATACAAAAGGACGATGTGATCAAGGTGGTCCCTGGTTCAAAAGTAGCATCTGATGGCTTTGTCATATGGGGACAAAGTCATGTAAATGAGAGCATGATAACCGGAGAGGGAAGGCCTGTGGCAAAGAGGAGGGGTGATATGGTGATTGGAGGCACTATGAATGAGAATGGGGTTATGCATGTTAAGGTGACAAGAGTTGGATCCGAGAGTGCTCTCTCCCAGATCGTTCGTCTTGTTGAGTCAGCTCAGATGGCTAAAGCTCCAGTTCAAAAACTTGCAGATCATATTTCTAAATATTTTGTTCCTCTGGTCATTGTGCTTTCTCTTTCAACATGGCTCTCCTGGTTTCTAGCAGGAAAGTTACATGCATACCCGAAATCTTGGATACCATCCTCCATGAACTACTTTGAGCTTGCACTTCAGTTTGGTATTTCGGTCATGGTCATTGCCTGCCCTTGTGCTCTAGGCCTAGCCACTCCTACTGCTGTTATGGTTGGTACTGGAGTTGGTGCAACGCAAGGTGTTTTGATCAAAGGGGGCCAAGCACTAGAAAGTGCACACAAGGTGAATTGCATTGTGTTTGACAAAACAGGAACACTCACAGTTGGGAAGCCAGTGGTTGTGAACAGCGAACATCCAATTGCTAAGGCCATTGTTGAGCACGCCAAGAAGATCACAGAAGAACAAAATCATTCCTGGCCAGAAGCACACAACTTTGTTTCTGTTTCAGGCCATGGAGTAAAGGCCATTGTTCTAAACAAGGATATATTGGTTGGGAATAAAAAGATGATGCTGGATCATAACATAACCATTTCAGCAGATGCTGAAGAAATACTAGCAGAAGCTGAAAGCCTGGCTCAAACTGGGATTTTAGTATCCTTGGATGGAGAAGTCGCTGGAGTTTTGGCTGTCTCAGATCCATTGAAACCTGGCGCCAATGAAGTTATTTCCATTCTTAATTCCATGAAAATTAAGAGCATCATGGTGACAGGTGATAACTGGGGTACTGCCAATTCCATTGCCAGACAAGCCGGTATTGAAACTGTCATAGCAGAGGCTCAACCAGAGACTAAAGCAACTAAAATAAAAGAACTGCAGAAGTTGGGGCAGGCTTCTGGGTATACGGTGGCAATGGTGGGAGATGGCATCAACGACTCACCAGCACTTGTGGCAGCTGATGTTGGAATGGCAATAGGTGCTGGCACAGACATTGCAATTGAGGCAGCTGACATCGTTCTGATGAAGAGCAACTTGGAAGATATAATCATTGCCATTGACCTTGCAAACAAAACCTTCTCTCGTATACGTCTAAACTACTTTTGGGCTTTGGGTTACAATATCTTAGCCATCCCAATTGCAGCGGGCATTCTTTACTCATCCACTAGATTTCGCTTACCACCCTGGATTGCTGGAGCTGCAATGGCTGCCTCTTCTCTCAGTGTGGTGGTGTGTTCCCGGAGTTGTGCGGAGGGAGAGGTCGTCACGGGTCCTTGGTGGTGCAGGGGGGTGGCTTGCGGTGGTGCTGTGGTGGTTGATTGGTGGTTCTGTGGTGGTGTTTTTCTTGGTGAGATGGATGGTGCATCTATTATGGGTGTTTGA 2973 0.4504 MGEKLEGWECSSSFQCCGNLWPKAHYPSMTAVEAGKTVAELEGSESKVVLFGVTGMTCAACAGSVEKTIKRLPGIREAVVDVLNHKAQVLYFPSMVNEERIREAIEDAGFEAKVIEEDSNYTSTQICRIHIRGMTCTSCSSTIESALQSLRGVHKARVALATEEAEVHYDPKILTHNYLMEAIQGTGFEAILISTGEHMSKIELKIDGIKNDQSLGAIERSLRSFPGVETIDIYPDINKIAITYIPHMTGPRTFIEVIESTGSGCFKAVIFPNDEGREALRQQEINRYFKLFIWSLAFTIPVFLTSMVLMYIPGVKRVLDVKIVNMLNIGLLLRCDFATPVQFIIGRRFYVGAYKALRKGSANMDVLIALGTNAAYFYSLYVVERSVFSRHFKGNDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMNLTPETATLLTQDDKGDVVSEKQIDIRLIQKDDVIKVVPGSKVASDGFVIWGQSHVNESMITGEGRPVAKRRGDMVIGGTMNENGVMHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADHISKYFVPLVIVLSLSTWLSWFLAGKLHAYPKSWIPSSMNYFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVNSEHPIAKAIVEHAKKITEEQNHSWPEAHNFVSVSGHGVKAIVLNKDILVGNKKMMLDHNITISADAEEILAEAESLAQTGILVSLDGEVAGVLAVSDPLKPGANEVISILNSMKIKSIMVTGDNWGTANSIARQAGIETVIAEAQPETKATKIKELQKLGQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLANKTFSRIRLNYFWALGYNILAIPIAAGILYSSTRFRLPPWIAGAAMAASSLSVVVCSRSCAEGEVVTGPWWCRGVACGGAVVVDWWFCGGVFLGEMDGASIMGV 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00280 990 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872
Vian10g00280 990 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Vian10g00280 990 Pfam E1-E2 ATPase 432 629 - -
Vian10g00280 990 Gene3D - 618 894 IPR023214 -
Vian10g00280 990 Gene3D - 124 195 - -
Vian10g00280 990 Gene3D - 46 119 - -
Vian10g00280 990 CDD HMA 53 113 IPR006121 GO:0046872
Vian10g00280 990 NCBIfam heavy metal translocating P-type ATPase 364 943 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vian10g00280 990 SUPERFAMILY HMA, heavy metal-associated domain 45 118 IPR036163 GO:0046872
Vian10g00280 990 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 666 943 - -
Vian10g00280 990 FunFam Copper-transporting ATPase HMA5 46 117 - -
Vian10g00280 990 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872
Vian10g00280 990 PRINTS Copper-transporting ATPase signature 560 574 - -
Vian10g00280 990 PRINTS Copper-transporting ATPase signature 421 439 - -
Vian10g00280 990 PRINTS Copper-transporting ATPase signature 401 420 - -
Vian10g00280 990 PRINTS Copper-transporting ATPase signature 810 827 - -
Vian10g00280 990 PRINTS Copper-transporting ATPase signature 349 368 - -
Vian10g00280 990 PRINTS Copper-transporting ATPase signature 910 924 - -
Vian10g00280 990 SUPERFAMILY Calcium ATPase, transduction domain A 451 537 IPR008250 -
Vian10g00280 990 NCBIfam HAD-IC family P-type ATPase 404 919 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian10g00280 990 Gene3D - 196 270 - -
Vian10g00280 990 CDD HMA 216 262 IPR006121 GO:0046872
Vian10g00280 990 FunFam Copper-transporting ATPase 1, putative 419 541 - -
Vian10g00280 990 Pfam Heavy-metal-associated domain 129 189 IPR006121 GO:0046872
Vian10g00280 990 Pfam Heavy-metal-associated domain 53 111 IPR006121 GO:0046872
Vian10g00280 990 SUPERFAMILY HMA, heavy metal-associated domain 123 197 IPR036163 GO:0046872
Vian10g00280 990 ProSiteProfiles Heavy-metal-associated domain profile. 200 266 IPR006121 GO:0046872
Vian10g00280 990 FunFam ATPase copper transporting beta 122 195 - -
Vian10g00280 990 Pfam haloacid dehalogenase-like hydrolase 647 851 - -
Vian10g00280 990 Gene3D - 656 764 IPR023299 GO:0000166
Vian10g00280 990 CDD HMA 131 190 IPR006121 GO:0046872
Vian10g00280 990 ProSitePatterns E1-E2 ATPases phosphorylation site. 653 659 IPR018303 -
Vian10g00280 990 FunFam Probable copper-transporting ATPase HMA5 743 894 - -
Vian10g00280 990 SUPERFAMILY Calcium ATPase, transmembrane domain M 402 643 IPR023298 -
Vian10g00280 990 SUPERFAMILY HMA, heavy metal-associated domain 196 265 IPR036163 GO:0046872
Vian10g00280 990 PRINTS Copper-transporting ATPase 1 signature 149 170 - -
Vian10g00280 990 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Vian10g00280 990 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Vian10g00280 990 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Vian10g00280 990 CDD P-type_ATPase_Cu-like 292 943 - -
Vian10g00280 990 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Vian10g00280 990 PRINTS P-type cation-transporting ATPase superfamily signature 651 665 - -
Vian10g00280 990 PRINTS P-type cation-transporting ATPase superfamily signature 837 856 - -
Vian10g00280 990 PRINTS P-type cation-transporting ATPase superfamily signature 860 872 - -
Vian10g00280 990 PRINTS P-type cation-transporting ATPase superfamily signature 758 769 - -
Vian10g00280 990 PRINTS P-type cation-transporting ATPase superfamily signature 780 790 - -
Vian10g00280 990 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872
Vian10g00280 990 Gene3D - 419 541 - -
Vian10g00280 990 NCBIfam copper ion binding protein 51 112 IPR006122 GO:0005507
Vian10g00280 990 NCBIfam copper ion binding protein 129 190 IPR006122 GO:0005507
Vian10g00280 990 SUPERFAMILY HAD-like 650 941 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00280 Vian-Chr10 2569262 2576688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00280 50 943 Primary Pumps ATPases AT1G63440 70.793 0.0 1330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00280 K17686 - gmx:100817431 1573.14