Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00274 ATGCTGTACGTGGAAGCTGAAAGGGGTGGTGAGTTCACTAAATTGAAGTCACCCGAGTCGAATTCTGATAGCATTGTTGAAAATCCTTCAAAGGGTGGAGAAAGTTCTGAACTTGGTGAGGGTGATGTTGGTTTGGATTCTGTGTTGTCCTTGGCTGAATGGAGGCATTGGGGCACTTCTGCGTCGCGGCTTGCGCGAGGTGGTGCTCCTGTGAAGATGCTTCACGGTGGCGTGGACTGTGTGGGGGTGAGGGTTATTCGTGGGATGAGGTATGAGGGGAGTGCTTCTGCTTCTGGTAAGGTGTATGTGTATGATGGAGTGTATAAGATTACTGAGTGCTGGTTTCAAAAGGGGAAATCTGGTTTTGGGGTTTACAAGTTTAGGCTTTCCAGGATTGAGGGGCAGGCTGAGATGGGAAGTGTTATTTTGAAGGAAGCTAGGAATATTAGGAGGGGTGAAATGGAATCGAATATTGTTCGTTTTCTTTCTGCTGATATGACAAGTTTTCCACAGTTTGTGTTTCATCAGAGTGGGAATGTTACTGGTTGTGACTGTGTGAATGGTTGTGGTGATGGATGCTTTTGTGCTATGAAAAATGGGGGTGATTTTCCTTACACTCTGCAGGGACATCTTGTGAAAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGTTCTTGTCCTTCTCTGTCGTAA 696 0.4583 MLYVEAERGGEFTKLKSPESNSDSIVENPSKGGESSELGEGDVGLDSVLSLAEWRHWGTSASRLARGGAPVKMLHGGVDCVGVRVIRGMRYEGSASASGKVYVYDGVYKITECWFQKGKSGFGVYKFRLSRIEGQAEMGSVILKEARNIRRGEMESNIVRFLSADMTSFPQFVFHQSGNVTGCDCVNGCGDGCFCAMKNGGDFPYTLQGHLVKGKPLIFECGPFCSCPSLS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00274 231 SMART G9a_1 21 135 IPR003105 -
Vian10g00274 231 ProSiteProfiles Pre-SET domain profile. 181 231 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian10g00274 231 Pfam SAD/SRA domain 82 135 IPR003105 -
Vian10g00274 231 Pfam Pre-SET motif 170 229 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian10g00274 231 Gene3D SET domain 146 231 IPR046341 -
Vian10g00274 231 MobiDBLite consensus disorder prediction 1 41 - -
Vian10g00274 231 SUPERFAMILY SET domain 172 228 IPR046341 -
Vian10g00274 231 SUPERFAMILY PUA domain-like 82 148 IPR015947 -
Vian10g00274 231 SMART preset_2 146 226 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian10g00274 231 MobiDBLite consensus disorder prediction 15 31 - -
Vian10g00274 231 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 79 228 - -
Vian10g00274 231 Gene3D - 78 145 IPR036987 -
Vian10g00274 231 ProSiteProfiles YDG domain profile. 1 131 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00274 Vian-Chr10 2535669 2536598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00274 82 227 Su(var)3-9 homologs AT5G04940 38.857 1.62e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00274 - K11420 pvu:PHAVU_003G282200g 246.128