Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00250 ATGGCTCGACAACTGTGTGAAGACAAATCATCATCCGAATTCTGCTACTCTGATGTGTCATCGGGAAATCCAACGATGCTGGTGAACCAGATCCAAGGCTTTGTGTCAGACCCGGAGATGTACAACCTCAGCACGGGCATGGAAATGATAGGGTTTCCAAAGAGTGACACCAACGCTGTCATGTGGAGAAGTTTCATCCCCAAACCGGGTTCTTCCTCTTCCAAAACCATGAACGAATCTTCCACCCCTTTCTACCACCGTGACTACAGCAACAAGCCTTCAGATTTCACACCGGGGAATATTTCTGAAACAAGTGCCGAGAATCTAATTGTTGGAGCCCACGATTCGGCCCCGTGGCAAGACGACAACAGCCATAACAGGTTTGACGATTCTTCTTTAAGGTGCGTGTTCCCTTGTGAAGCCAACGAAAGGCCCAGTCAAGGTCTTTCACTCTCTCTCAGTTCAACCAACCCTTCCACTATCGGGTTGCAGTCTTTTGAGCTACGACAAACAAGCCACCATCCTGATTTTGTTCCCTCGGGTTCCAGAGAAGGGTTCTTTGGAAAACCAGTGAGTGTTCAGCAGCAACAGATGTTACAAGATGGGTATGCGAGTTCTAATTCCAAAGCTGCAAGTGTTTACCAACAAGGACATTTCCTGGTGAAGAACTCCAAGTATTTGTTGCCTGCACAGGACCTTCTCAACGAGTTTTGTAGCCTAGACGCAAAGATAAGTGAGGCGGGAAAGCTTAAATCGTTGAAGAAGCAGTGGGAAGAGGATAACATATGTACTGGTTCCTCGAAGAAGCCTTCTCTGACCTCTCTCGAGTTCGTGGAATTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTCGAGAGAAGGTACAAGCACTACCGAAATCAGATGAAGAGCGTGGTGTCGTCGTTTGAAGCGGTGGCGGGTAATGGTGCTGCCACGGTGTACTCGGCGTTGGCTCTGAAAGCCATGTCGAGACATTTCAAATGTTTGAAGGATGGGATTTTGGGGCAGATTCAAGCAACAAGAAAAGCCATGGGAGAGAAAGACCCAGTTGCACCAGGCACAACAAGGGGTGAAACACCTAGGCTCAAAGTCATTGACCAAGCACTGAGACAACAAAGGGCGTTTCAGCAAATGAGCATGATGGAAACCCACCCTTGGAGACCCCAACGTGGCCTTCCCGAGCGTGCTGTTTCGGTTCTTCGGGCTTGGCTTTTTGAGCATTTTCTCCATCCGTACCCAAGCGATGTCGATAAGCATATTTTAGCACGCCAAACCGGTCTCTCGAGAGGCCAGGTTTCGAATTGGTTTATTAATGCAAGGGTGAGACTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAAGTGAAGGATCATGAGAACAACATAGCTTCCTCAGATGGTGCTACTGATCCAGACAATGATATAAACTCAAATGTTCAAAACCCTCCTCCACCCCATACAACACGATCAGAGGATCAGAAGCCATCACTGCTTCGAATAGACTCAGAGTGTGCGTCCTCCATCATCAACAACCACACCATAGACAACAAAAACGACCCAAAGAGCCAAGAACAGTGCTTTGGGTCGGTGGAGCTTGATTTTTCATCATACACACACCAGTCCCCGGGCATGGTTTCTTTCGGAAGCAATGATCAAAGCGGGAACAGCCAGAGCGGGGTGTCTCTCACACTAGGGTTACAGCAGCATGGAGTCAGCCTAGCGTTCCCGCCACCATCACAGAGTTCACTGTACTACGCAAACCCAAGGGACCAAATTGAAGATTGCCAACCAGTTCAGTACTCTCTTTTGGATGCTGAAGGACAAAACCTGCCTTACAGAAATTTAATGGGAGCACAGCTTCTCCATGATTTGGCAGGATAG 1914 0.4828 MARQLCEDKSSSEFCYSDVSSGNPTMLVNQIQGFVSDPEMYNLSTGMEMIGFPKSDTNAVMWRSFIPKPGSSSSKTMNESSTPFYHRDYSNKPSDFTPGNISETSAENLIVGAHDSAPWQDDNSHNRFDDSSLRCVFPCEANERPSQGLSLSLSSTNPSTIGLQSFELRQTSHHPDFVPSGSREGFFGKPVSVQQQQMLQDGYASSNSKAASVYQQGHFLVKNSKYLLPAQDLLNEFCSLDAKISEAGKLKSLKKQWEEDNICTGSSKKPSLTSLEFVELQKRKTKLLSMLEEVERRYKHYRNQMKSVVSSFEAVAGNGAATVYSALALKAMSRHFKCLKDGILGQIQATRKAMGEKDPVAPGTTRGETPRLKVIDQALRQQRAFQQMSMMETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQVSNWFINARVRLWKPMVEEMYLEEVKDHENNIASSDGATDPDNDINSNVQNPPPPHTTRSEDQKPSLLRIDSECASSIINNHTIDNKNDPKSQEQCFGSVELDFSSYTHQSPGMVSFGSNDQSGNSQSGVSLTLGLQQHGVSLAFPPPSQSSLYYANPRDQIEDCQPVQYSLLDAEGQNLPYRNLMGAQLLHDLAG 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00250 637 Coils Coil 277 311 - -
Vian10g00250 637 Gene3D - 399 461 - -
Vian10g00250 637 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 141 481 - -
Vian10g00250 637 FunFam BEL1-like homeodomain protein 4 399 461 - -
Vian10g00250 637 SMART HOX_1 396 460 IPR001356 GO:0003677
Vian10g00250 637 Pfam Homeobox KN domain 413 452 IPR008422 GO:0003677|GO:0006355
Vian10g00250 637 ProSiteProfiles 'Homeobox' domain profile. 393 456 IPR001356 GO:0003677
Vian10g00250 637 Pfam Associated with HOX 221 343 IPR006563 -
Vian10g00250 637 SUPERFAMILY Homeodomain-like 397 463 IPR009057 -
Vian10g00250 637 CDD homeodomain 396 457 IPR001356 GO:0003677
Vian10g00250 637 SMART prehox3 215 345 IPR006563 -
Vian10g00250 637 MobiDBLite consensus disorder prediction 472 507 - -
Vian10g00250 637 MobiDBLite consensus disorder prediction 475 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00250 Vian-Chr10 2164964 2167983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00250 137 636 Homeobox Transcription Factor Family AT5G41410 48.358 3.73e-139 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian10g00250 POX 1.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00250 - - gmx:100803088 1102.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00250 10 2164964 2167983 Vian10g00250 10 2164964 2167983 ECH
Vian10g00250 10 2164964 2167983 Vian1g03853 1 61598308 61601452 PCT