Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00243 ATGATCATTTCCGAGAAGAACCGTCGAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTATGCGAAGAAGGACTTCAATCTGGCAAAGCACCCAGATATTGATGTTCCAAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAGTCCAGGGAGTACGTGCGCGAGACATTTGCTTGGATGCATTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGAACATACCTCAACCTTCCCTCGGAAATCGTGCCCGCTACTCTTAAGAAGCAGGCCAAGCCCGCCGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGGGGCCCACCTCGCTTTGAGGGAGAGAGGAGGTTTGGTGGTGATAGAGATGGATACCGTGGAGGTCCCCGGGGACCTGGTGGTGACTTTGGGGACAAAGGTGGAGCTCCTGCTGACTACAGACCTTCATTTGGGGGTCCTGGTGGAAGGCCTGGTTTCGGTCGTGGTGCTGGTGGTTATGGAGCACCAACAAGTTCAAACATTCCTTGA 540 0.5296 MIISEKNRREICKYLFQEGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGAPTSSNIP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00243 179 MobiDBLite consensus disorder prediction 112 128 - -
Vian10g00243 179 Pfam Plectin/S10 domain 3 94 IPR005326 -
Vian10g00243 179 Gene3D - 1 104 IPR036388 -
Vian10g00243 179 PANTHER 40S RIBOSOMAL PROTEIN S10 1 173 IPR037447 -
Vian10g00243 179 MobiDBLite consensus disorder prediction 93 179 - -
Vian10g00243 179 FunFam 40S ribosomal protein S10 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00243 Vian-Chr10 2115849 2117506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00243 1 179 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 75.419 1.75e-77 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00243 K02947 K09422 gmx:100797787 228.024