Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00242 ATGAAATCAACCCTTTTCTTTTATTTATTTATGATTGATGTTCATTCTTTGGCCTGGCTTCCAGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGAAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCACGGGGTTGTTGGCAACAGATGGGCGCACATTGCAAGCCACTTACCAGGTAGAACTGACAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATTAGAAAGCCTTCGGTGACTTCATCAATCACCACTACACAGAGTGTGGATCACCACCCTCAGTTCAATTATAGTTCCAACCAACTAGATCACTTTGGCAACCAAGACAACGTAACAACAAAACCAGCGGTGCAAGAAACCATATTTTCCTCGACGTGCCCTCTATTTATGTTTGACACTAGTTCGTTAGACCACGGGACAACAACAGTAGACACCACCAATGTTCGAGCAGAACTGTTCCAAGATTCATTGGGTTTGAGCAGCGAAACGTGGAACTTGAGCCACCACCAAGTCCATCATGCTCTTCCTCCTCAACCAGCACAGGCAGCAGCAACTTTTACAGCAGCTACAGTGATGGATAGTACGAATTATCTGCCACCATTGATAGAGAATGTGGAAAACATGGTGCCAAACATGGAAGTGCAGGGTTGTAGTATAGACGAGGAAGGAGAAATGGCACTGGAGTGTTTGCGGAGACAAGAGTTGAATGAGTGGGTGGAGAATCAACAACACTGTCCCAGTTTTCTTTTCTGGGACAGCGTTGAAGGACAACTTGGGGGGGAAGAACTAGCACCAAACACGTCAAATATTGGAACCAATACACTTTCACCTTTTCCTTCATCTTTATGA 906 0.4338 MKSTLFFYLFMIDVHSLAWLPGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVTSSITTTQSVDHHPQFNYSSNQLDHFGNQDNVTTKPAVQETIFSSTCPLFMFDTSSLDHGTTTVDTTNVRAELFQDSLGLSSETWNLSHHQVHHALPPQPAQAAATFTAATVMDSTNYLPPLIENVENMVPNMEVQGCSIDEEGEMALECLRRQELNEWVENQQHCPSFLFWDSVEGQLGGEELAPNTSNIGTNTLSPFPSSL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00242 301 PANTHER MYB DOMAIN PROTEIN 55 20 252 - -
Vian10g00242 301 ProSiteProfiles Myb-like domain profile. 39 89 IPR001005 -
Vian10g00242 301 Gene3D - 45 116 - -
Vian10g00242 301 Gene3D - 13 43 - -
Vian10g00242 301 CDD SANT 46 89 IPR001005 -
Vian10g00242 301 Pfam Myb-like DNA-binding domain 44 88 IPR001005 -
Vian10g00242 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 93 IPR017930 -
Vian10g00242 301 MobiDBLite consensus disorder prediction 281 301 - -
Vian10g00242 301 SUPERFAMILY Homeodomain-like 24 99 IPR009057 -
Vian10g00242 301 SMART sant 43 91 IPR001005 -
Vian10g00242 301 FunFam Transcription factor MYB26 45 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00242 Vian-Chr10 2112036 2113626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00242 22 285 MYB Transcription Factor Family AT1G63910 44.164 3.12e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian10g00242 Myb_DNA-binding 9.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00242 K09422 K02947 gmx:100797787 476.478