Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00238 ATGGACAATCTTCATCAAAAGTTGGAAGAACTTGCACGCGGGATGGCTTGGGATTTGCATGCTATTGTGGGATGTACAATTGCCCCAGCCACCATTATGGACAACCCGAATCTCATTCTTTCTCAACATTTTTGTGCTGAACAAGATGACCTACTTTGCAATTTTCAGGAATTCTCAGAAACCAAAACGGTGCTTGATGAATTGGAAGAGATTTATAAACCTTTCTACCCCCAATTTCGTAACAGTTCCATCATTTCAAGTTCCCAACCCGTCCCTGATAAAACTGTCAAAAAACTCAAACCATCAAACAAAGTAGATGTACAAGCACAAGATTTGCACGATACCGCAGTCTCTAAATGCAGAAAAAGCAAGAAGAAGCTGAAGAGCAAGAGGGTGGTGAAGCATATGACAGCTGCAGATGGTGTGTCAGACCCATGGGCATGGCGTAAATATGGACAGAAACCGATAAAGGGATCACCATATCCACGTAGCTATTATAGATGCAGCAGCTCCAAAGGATGTTTGGCCAGGAAACACGTGGAACGTAGCCATTTGGATCCCGGAGTTTTCATAGTTACCTACACCGCAGAACACAGCCCTCACCAAGCTCGAAAAAACTCAACTTCCACCATTGCACCTCCTCCAACAACGAAGTGA 657 0.4399 MDNLHQKLEELARGMAWDLHAIVGCTIAPATIMDNPNLILSQHFCAEQDDLLCNFQEFSETKTVLDELEEIYKPFYPQFRNSSIISSSQPVPDKTVKKLKPSNKVDVQAQDLHDTAVSKCRKSKKKLKSKRVVKHMTAADGVSDPWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKHVERSHLDPGVFIVTYTAEHSPHQARKNSTSTIAPPPTTK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00238 218 SMART WRKY_cls 142 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g00238 218 Gene3D WRKY domain 123 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian10g00238 218 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 47 209 IPR044810 GO:0003700
Vian10g00238 218 MobiDBLite consensus disorder prediction 196 218 - -
Vian10g00238 218 MobiDBLite consensus disorder prediction 199 218 - -
Vian10g00238 218 Pfam WRKY DNA -binding domain 144 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g00238 218 SUPERFAMILY WRKY DNA-binding domain 136 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian10g00238 218 ProSiteProfiles WRKY domain profile. 137 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g00238 218 FunFam WRKY transcription factor 22 125 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00238 Vian-Chr10 2082527 2083479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00238 8 207 WRKY Transcription Factor Family AT4G23550 41.860 1.71e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian10g00238 WRKY 2.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00238 K13426 - gmx:102667019 249.595