Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00227 ATGGATCGAAGAAACATTTTGTTATCGGCGCTGAGCGTTGGGGTGGGTGTAGGAGTGGGGATTGGGTTGTCCTCCGGACAAGGCCTTCCCAAATGGGGTGTTAATGGTAATTCTTCCTCAGACGGCGTTACTCCGGAGAACCTCGAACATGAAATGCTACGAATGGTCGTGGATGGCAGAGAAACCAATGTCACTTTCGATCAATTCCCTTTTTATCTTAGGGAGCAGACAAGGGTAACGCTAACAAGTGCTGCTTATGTCCATTTGAAGAATGCGGAGGTTTCCAGACATACACGGAATCTTGCTCCTGCAAGCCGGACTATCATGCTTTCAGGGCCAGCGGAGCTTTATCAACAAGTGCTTGCCAAAGCTTTAGCCCACTACTTTGAGGCGAAGTTGCTTCTGTTAGATCTCACTGACTTTTCATTGAAGATTCAGAATAGATATGGTTATGCCAACAATCGATCGATTTTCAAAAGGTCTACCTCAGAGACAACTTTGGAGCGGATATCCGACCTATTTGAATCATTTTCAATCTTTTCACAAAAAGAAGAACTTAAAGATGAAGAGAGAGTAGAGAGGGAATCTGAAAGATTGTATCCTTCTAAGATTCGTAGGAATGCGTCTGCCTCTGCAAATATCAGTAACCTTGCTTTGCAAAGCAATCCTACAAATTCAGCTTCAGCCCCTCAGAAGAACATAACGAACTTGCCTTTTGATGAAAAGCTTCTTGTACAAACTCTTTATAAGGTTCTGATTTATGTATCAAAAACCTATCCTATTGTTCTATATTTGCGGGATGTTGACAAGTTATTGTATAGATCACAACGGATATATAACCTATTCCAGAAAATGTTGAATAAACTGCATGGACGAATTTTGATTCTTGGCTCACGAGTTTTGGATTCTGGAAGTGACTACAAAGAAGTGGATGAAAGACTTTCTTCCGTCTTCCCCTACAACATAGAAATCAGTCCCCCAGAAGATGAATATTATCATGTCAGCTGGAAGTCTCAATTTGAAGAGAACATGAAGACGATACAGACTCAGGATAATAGGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTTATTGTGATGACCTGGGTTCCATCTGTGTGGCAGATACGATGGCTTTCAGTGACCATATAGAAGAGATCGTCGTGTCAGCAATTTCTCATCATTTAATGAATAACATAGATCCTGAATACAGAAATGGCAAACTAGTTATTCCTTGTAGCAGCTTGTCCCATGCATGGGGTATATTCCAGGAGGGGAAATTCAGTACAAGAGATACATTAAAATTAGAAGCCCAGGCAGTTACGACTGAGCCGAGAGAAGAAGCTGTTGTGAAGCCAGAAACAGCATCAGAAAAACCTGCTCCTGAAATAAAGGCTGAAGCAGATACATCAATTTCAGTGGGAACAACTGACGGTGAAAATGTAGTTCCTGCATCAAAAGTTGAAGTTCCCCCTGACAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAACGAAATTGGTGTAAAATTCTCTGATGTTGGTGCCTTAGATGAGACCAAAGAATCGCTTCAAGAACTAGTTATGCTTCCTCTTCGAAGGCCAGACCTTTTCCGCGGAGGCCTTCTAAAGCCTTGTAAAGGAATATTGCTTTTTGGACCTCCTGGCACAGGGAAGACAATGCTGGCAAAGGCCATTGCAAACGAAGCTGGAGCAAGTTTCATTAATGTATCCATGTCTACCGTCACCTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGAGCTTTGTTCACTCTGGCAGCCAAGGTCTCCCCAACTATTATATTTGTTGATGAGGTTGATAGTATGCTGGGGCAACGTACCAGAGTTGGAGAGCATGAAGCCATGCGGAAAATAAAGAATGAGTTTATGACACTTTGGGATGGACTAATGACAAATCCAGCGGAGCGTATCCTTGTTCTTGCTGCGACCAATAGGCCGTTTGACCTGGATGAAGCAATAATTAGGAGATTTGAAAGGAGAATAATGGTGGGGATGCCAAGCGTGGAGAACAGGGAAAAAATTTTGAGGACTCTTTTGCGAAGAGAAAAGGTGGACAAGAAATTTGATTTTAAGGAACTCGCAACTATGACAGAAGGATACAGCGGAAGTGATCTCAAGAACTTGTGTACAACTGCTGCTTACAGACCTGTTAGAGAGTTAATTCAACAAGAGAGACTAAAAATGCTGGAGAAAAGGCAGAAAGGTGTTGAAGAACAGAATAACAATGTCCAAGAAGTACCGGGAAATCAATCTTCAGTGGGAAATATCCAAGATGCTTTGGAAGCAAAAGAGGAAGTTAAACAGGAAAGAGTAATTTCCCTTAGACCTTTGAACATGCAAGACTTCAAAGAGGCTAGGAGTCAGCGACATGATAAGATTGCTTCATTTGACCATCATCTTGGAACACAGGTTTCCGCAAGCTACGCAGCTGAGGGGGCTGGAATGAGTGAGTTAAAGCAGTGGAATGAAATGTATGGGGAAGGAGGTTCAAGAAAGCGAGAGCAATTATCTTACTTCCTGTGA 2580 0.4229 MDRRNILLSALSVGVGVGVGIGLSSGQGLPKWGVNGNSSSDGVTPENLEHEMLRMVVDGRETNVTFDQFPFYLREQTRVTLTSAAYVHLKNAEVSRHTRNLAPASRTIMLSGPAELYQQVLAKALAHYFEAKLLLLDLTDFSLKIQNRYGYANNRSIFKRSTSETTLERISDLFESFSIFSQKEELKDEERVERESERLYPSKIRRNASASANISNLALQSNPTNSASAPQKNITNLPFDEKLLVQTLYKVLIYVSKTYPIVLYLRDVDKLLYRSQRIYNLFQKMLNKLHGRILILGSRVLDSGSDYKEVDERLSSVFPYNIEISPPEDEYYHVSWKSQFEENMKTIQTQDNRNHIMEVLAANDLYCDDLGSICVADTMAFSDHIEEIVVSAISHHLMNNIDPEYRNGKLVIPCSSLSHAWGIFQEGKFSTRDTLKLEAQAVTTEPREEAVVKPETASEKPAPEIKAEADTSISVGTTDGENVVPASKVEVPPDNEFEKRIRPEVIPANEIGVKFSDVGALDETKESLQELVMLPLRRPDLFRGGLLKPCKGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTVTSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTLWDGLMTNPAERILVLAATNRPFDLDEAIIRRFERRIMVGMPSVENREKILRTLLRREKVDKKFDFKELATMTEGYSGSDLKNLCTTAAYRPVRELIQQERLKMLEKRQKGVEEQNNNVQEVPGNQSSVGNIQDALEAKEEVKQERVISLRPLNMQDFKEARSQRHDKIASFDHHLGTQVSASYAAEGAGMSELKQWNEMYGEGGSRKREQLSYFL 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00227 859 Pfam ATPase family associated with various cellular activities (AAA) 553 683 IPR003959 GO:0005524|GO:0016887
Vian10g00227 859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 752 IPR027417 -
Vian10g00227 859 Gene3D - 512 684 IPR027417 -
Vian10g00227 859 Coils Coil 745 765 - -
Vian10g00227 859 SMART AAA_5 549 686 IPR003593 GO:0016887
Vian10g00227 859 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 48 858 - -
Vian10g00227 859 Pfam AAA+ lid domain 707 742 IPR041569 -
Vian10g00227 859 Gene3D - 685 757 - -
Vian10g00227 859 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 512 687 - -
Vian10g00227 859 ProSitePatterns AAA-protein family signature. 656 675 IPR003960 GO:0005524|GO:0016887
Vian10g00227 859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 343 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00227 Vian-Chr10 1997970 2003341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00227 465 747 Calmodulin-binding Proteins AT3G56690 34.708 3.28e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00227 - - gmx:100783137 1307.74