Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00226 ATGGGAAACTGTAACAGCGAAGCTTCTTCCCAAACGCAGCTATATTCCGACCATCTCCATGATCACCCTCAACCTTCCAACGGCATCAGCGTTCTACCTACGAATTCCAAGCCCTCCGTGGGTCGGGTCCTGAACCGGCCCATGGAGGACGTCCGCTCCACCTATATATTCGGCCGTGAACTAGGCCGCGGGCAATTCGGCGTCACCTACTCAGTGACCCACAAGCACACTAACGAACAATTGGCGTGCAAATCCATTGCCACGCGCAAACTCGTCCACCGCGACGACTTGGATGACGTCCGCCGCGAGGTGCAGATCATGCACCACCTCACCGGGCACCGCAACATTGTCGAGCTCAAGGGAGCCTACGAGGATCGACATTCTGTCAATCTTGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACCGGATCATCGCCAAGGGCCATTACTCCGAGCGCGCCGCTGCCGACCTCTGCCGCCAGATCGCCACGGTGGTGCACGACTGCCACACCATGGGAGTGATGCACAGGGATCTGAAGCCGGAGAACTTCTTGTTCCTCGGCAAGGAGGAAAACTCGCCGCTTAAGGCCACGGACTTCGGTCTCTCCGTGTTCTTCAAGCCCGGCGATGTGTTTAAGGACCTTGTTGGGAGTGCGTATTATGTTGCTCCTGAAGTGCTGCGTAGAAGTTATGGACCCGAAGCTGATATTTGGAGTGCTGGGGTTATATTGTTCATTCTGCTCTCTGGTGTCCCTCCCTTCTGGGCAGAAAATGAACAGGGTATCTTTAATGCTATTCTTCGTGGACGTATTGATTTTGAATCAGATCCTTGGCCTTCCATTTCAAGCAGTGCCAAAGATTTAGTCAAGAACATGTTACGAGTTGATCCCAAAAACAGGCCCTCGGCAGTTGAAGTCCTTAATCATCCTTGGATGAGAGAAGATGGAGCATCTGATAAACCTCTAGATATTGCTGTTTTAACCAGAATGAAGCAATTCAGGGCAATGAACAAGCTCAAGAAAGTAGCTCTCAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATCATTGGCTTGAAGGAAATGTTTAAATCCATGGACACAGATAACAATGGAATAATCACTTTTGAAGAGTTGAAAACTGGCCTGCCAAAACTGGGTACTAAGATTTCCGAGTCTGAAGTAAAGCAGTTAATGGAAGCGGCTGATGTAGACGGAAATGGGACCATTGATTACATTGAATTTATAACAGCTACCATGCATATGAATAGAATGGAAAGAGAGGACCACTTATATAAAGCTTTTGAATATTTTGACAAGGATAGAAGCGGGTACATCACTATGGAAGAGTTGGAATCTGCCCTTAAAAAATATAATATGGGTGATGAGGAAACAATAAAGGAAATCATTTCCGAAGTTGATACAGACAATGATGGAAGAATTAACTATGAGGAGTTTGTAGCCATGATGAGGAAAGGCAATCCAGATTTGGTAACCAAACGTCGCAAATAA 1515 0.4759 MGNCNSEASSQTQLYSDHLHDHPQPSNGISVLPTNSKPSVGRVLNRPMEDVRSTYIFGRELGRGQFGVTYSVTHKHTNEQLACKSIATRKLVHRDDLDDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIIAKGHYSERAAADLCRQIATVVHDCHTMGVMHRDLKPENFLFLGKEENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILFILLSGVPPFWAENEQGIFNAILRGRIDFESDPWPSISSSAKDLVKNMLRVDPKNRPSAVEVLNHPWMREDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNNGIITFEELKTGLPKLGTKISESEVKQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDKDRSGYITMEELESALKKYNMGDEETIKEIISEVDTDNDGRINYEEFVAMMRKGNPDLVTKRRK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00226 504 MobiDBLite consensus disorder prediction 1 20 - -
Vian10g00226 504 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00226 504 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Vian10g00226 504 ProSiteProfiles EF-hand calcium-binding domain profile. 427 461 IPR002048 GO:0005509
Vian10g00226 504 MobiDBLite consensus disorder prediction 27 41 - -
Vian10g00226 504 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Vian10g00226 504 ProSiteProfiles EF-hand calcium-binding domain profile. 391 426 IPR002048 GO:0005509
Vian10g00226 504 ProSiteProfiles EF-hand calcium-binding domain profile. 355 390 IPR002048 GO:0005509
Vian10g00226 504 Pfam EF-hand domain pair 430 492 IPR002048 GO:0005509
Vian10g00226 504 Pfam EF-hand domain pair 360 420 IPR002048 GO:0005509
Vian10g00226 504 PANTHER SERINE/THREONINE-PROTEIN KINASE 50 487 - -
Vian10g00226 504 Gene3D Transferase(Phosphotransferase) domain 1 141 320 - -
Vian10g00226 504 Gene3D - 321 495 - -
Vian10g00226 504 SUPERFAMILY Protein kinase-like (PK-like) 52 322 IPR011009 -
Vian10g00226 504 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00226 504 CDD STKc_CAMK 55 312 - -
Vian10g00226 504 Pfam Protein kinase domain 57 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00226 504 ProSitePatterns EF-hand calcium-binding domain. 404 416 IPR018247 -
Vian10g00226 504 SUPERFAMILY EF-hand 351 492 IPR011992 -
Vian10g00226 504 MobiDBLite consensus disorder prediction 1 42 - -
Vian10g00226 504 FunFam Calcium-dependent protein kinase 1 320 495 - -
Vian10g00226 504 FunFam Calcium-dependent protein kinase 1 57 140 - -
Vian10g00226 504 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Vian10g00226 504 ProSitePatterns EF-hand calcium-binding domain. 368 380 IPR018247 -
Vian10g00226 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Vian10g00226 504 FunFam calcium-dependent protein kinase 1 141 320 - -
Vian10g00226 504 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Vian10g00226 504 SMART efh_1 359 387 IPR002048 GO:0005509
Vian10g00226 504 SMART efh_1 466 494 IPR002048 GO:0005509
Vian10g00226 504 SMART efh_1 431 459 IPR002048 GO:0005509
Vian10g00226 504 SMART efh_1 395 423 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00226 Vian-Chr10 1989876 1995921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00226 41 504 EF-hand Containing Proteins AT4G23650 80.860 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vian10g00226 Pkinase 4.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00226 K13412 - gmx:100817321 922.539