Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00217 ATGCAACGCATTTCATTTTCCTGTTTGGTGTCTCTGGTTTCTCTGTTTTCCCTCTTTTTGTCCCGACCCAATGCAGAACCCACAGAAGACAAGCAAACACTGCTTCATTTAGTTGAAAAGTTGGCTCCTTCACGACCCCTCAATTGGAACGCAACCTCTTCCCCTTGTACATCTTGGACCGGTGTAACCTGCAACTCTGACCACTCACGAGTTATAGCCATTCACTTGCCAGGCTTTGGCTTTCATGGAACCATTCCTTCCAATACGCTAAGCCGTGTTACGTGCTTGCAGACACTCAGTCTCAGATCTAACTCCATAACCGGTCCTCTCCCTTCTGATCTCTCCAACCTCTCAGACCTTTCCTTTCTCTACCTTCAGTTCAACAATTTCTCTGGTCCCTTACCTGACTTCTCTGTCTGGAGTAACCTCTCTGTTGTCGACCTCTCCAATAACCGTTTCACTGGCACCGTTCCTCTCTCCCTCTCCAATTTGACTCATCTAACTGCCGTCAACCTCGCCAACAACTCGCTTTCTGGTCAAATCCCTCTTTCTCTCCACAGGTTTCCAGACTCGGCTTTTGTGGGAAACAATGTCTCTCTCCAGACAGTTTCACATTACAAATCTGCGAAACACGGTGAAACGGCTCTGTTTTGGGTTGTTGTTGCTGCTGCTTCTGTTGCTTTTGCAGCTTTCTTTGTTTTTATCTTTTTCTGCTGGTCCCGAAAGAAGAAAGGGGATTCCTTTGCTGGGAAAATGCTGAAGGGAGATATGTCTCCGGAAAAGGTAGTTTCCAGGGACCTTGATGCGAACAATAAGATCTTTTTCTTTGAGGGGTGTAGCTATGCGTTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTACTGGGGAAGGGGACGTTTGGTGCTGCATATAAGGCTGCTTTGGAGGATGCTACCACTGTTGTTGTGAAGAGGTTGAAGGAAGTGGCTGTTGGAAAGAAGGACTTTGAGCAGCACATGGAGGTTGTGGGGAATCTCAAACATGAGAATGTGGTTCAGCTAAAGGGGTATTACTATTCCAAAGATGAGAAACTCATGGTCTATGATTACTACTCTCAAGGGAGTCTCTCTACTTTGTTGCATGGTAAAAGAGAAGAGGATAGGGTGCCTTTAGACTGGGAGACTAGAATGAAAATTGCTTTGGGTGCTGCACGAGGCCTTACTCGAATCCATTGCGAGAATGGGGGGAAGCTTGTGCATGGCAACATCAGATCCTCAAATATCTTTGTGAATACTACACAATATGGTTGCATATCTGATCTTGGCCTGGCAACCATCATGAGTTCAGTTGCCATACCCATCTCACGAGCCGCTGGTTACAGAGCACCAGAAGTCACAGACACTAGAAAAGCAACGCAACCTGCTGATGTTTACAGTTTTGGTGTGGTGTTGCTGGAGATTCTCACTGGGAAATCCCCTGTGTACACCACTGGTGGCGACGAGATTGTGCACTTGGTGAGATGGGTTCATTCGGTTGTCAGAGAGGAGTGGACAGCAGAAGTGTTCGACTTGGAGCTGATCAGATATCCCAACATAGAGGAAGAGATGGTTGAAATGTTACAGATAGCCATGTCTTGCGTGGTGAGGGTTCCTGATCAGAGGCCTAAGATGTCGGAAATTGTAAAAATGATAGAAAATGTGAGGCAGATTGATATAGCCATCATGACTTAG 1713 0.4647 MQRISFSCLVSLVSLFSLFLSRPNAEPTEDKQTLLHLVEKLAPSRPLNWNATSSPCTSWTGVTCNSDHSRVIAIHLPGFGFHGTIPSNTLSRVTCLQTLSLRSNSITGPLPSDLSNLSDLSFLYLQFNNFSGPLPDFSVWSNLSVVDLSNNRFTGTVPLSLSNLTHLTAVNLANNSLSGQIPLSLHRFPDSAFVGNNVSLQTVSHYKSAKHGETALFWVVVAAASVAFAAFFVFIFFCWSRKKKGDSFAGKMLKGDMSPEKVVSRDLDANNKIFFFEGCSYAFDLEDLLRASAEVLGKGTFGAAYKAALEDATTVVVKRLKEVAVGKKDFEQHMEVVGNLKHENVVQLKGYYYSKDEKLMVYDYYSQGSLSTLLHGKREEDRVPLDWETRMKIALGAARGLTRIHCENGGKLVHGNIRSSNIFVNTTQYGCISDLGLATIMSSVAIPISRAAGYRAPEVTDTRKATQPADVYSFGVVLLEILTGKSPVYTTGGDEIVHLVRWVHSVVREEWTAEVFDLELIRYPNIEEEMVEMLQIAMSCVVRVPDQRPKMSEIVKMIENVRQIDIAIMT 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00217 570 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 365 568 - -
Vian10g00217 570 PANTHER OS05G0588300 PROTEIN 11 562 - -
Vian10g00217 570 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Vian10g00217 570 SUPERFAMILY L domain-like 42 191 - -
Vian10g00217 570 Pfam Protein tyrosine and serine/threonine kinase 294 557 IPR001245 GO:0004672|GO:0006468
Vian10g00217 570 Gene3D Phosphorylase Kinase; domain 1 258 364 - -
Vian10g00217 570 FunFam pollen receptor-like kinase 1 259 364 - -
Vian10g00217 570 FunFam Probable inactive receptor kinase RLK902 27 186 - -
Vian10g00217 570 Gene3D Ribonuclease Inhibitor 27 208 IPR032675 -
Vian10g00217 570 ProSitePatterns Protein kinases ATP-binding region signature. 296 327 IPR017441 GO:0005524
Vian10g00217 570 ProSiteProfiles Protein kinase domain profile. 290 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00217 570 Gene3D Transferase(Phosphotransferase) domain 1 365 567 - -
Vian10g00217 570 SUPERFAMILY Protein kinase-like (PK-like) 294 558 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00217 Vian-Chr10 1911396 1913706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00217 24 561 Receptor kinase-like Gene Family AT4G23740 60.580 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian10g00217 PK_Tyr_Ser-Thr 7.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00217 - - vun:114171626 1004.59