Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00216 ATGACTACGCCACCGACCAAGTTCACTCACCACACCAAACTACTCACACTCACTCACACCCAACACCACCCACCAAAAAACCCATGTCCCAGACTTGTCAGAATAACCGTCACGGACACTGACGCCACCGACTCCTCCAGCGACGAAGAACAAACCTTTCACTCTTCCAAGCGCCAACGCCAACGACAACGCCACACCAAATTCATCAACGAGATTTCCATCGAGCCCTGCGCTGCCGAGAACGACGCCGTCTTTTCCGGGAAGAGAGTTCGAAGAAGGAGCGTGGTGGGCAAGGGCAGAGTTGCAGAGACTCCGCGCGGGTCGACCGGAAAGAAATTCCGAGGAGTGAGACAGAGGCCGTGGGGAAAATGGGCTGCCGAGATACGAGACCCGTCGCGACGCGTGAGGTTATGGTTGGGTACCTACGACACTGCCGAGGAAGCCGCCTTAGTGTACGACAACGCGGCCATTAAGCTGCGTGGACCCGACGCGCTCACCAATTTCATAACGCCACCTGCCACGTGGCACAACAAAGACCAGACGCCGGTGTCCAACGGTTACGCCTCCGTTGAGGAAACTCAGAACAAAAACCTGTTTTCTCCCACCTCCGTACTTCATTCTTGCTCTTTGTCTGAGGAAGCTGAATCCGTGACCGGCAAAGACGATGACTACTCCTCCGTGTCTGAAAGTTCCAAGGCAAAAGCTGAGTCACCGTTTCCGGTTCCGATTCCGATTCCGAGTGAACTAAAATTTGACTTCGAAGACTGTTTGGCGGCGCCGGACGTGTACGGCGAGTTAGATGGCGCTGCGGCGGCTGAGAGTGTTTTGTTCTCCGACGATGACTGGCCTGGGGTGTTTCTCACTGCTTGTGAGGATTTCGGTTTGAAAAGTTGGCATGCAGACAGAAATCATGACTTTTTCCAAGACATCGACGATTTATTTGTCTCCGATCCTCTTCTTGCTCTTTGA 969 0.5377 MTTPPTKFTHHTKLLTLTHTQHHPPKNPCPRLVRITVTDTDATDSSSDEEQTFHSSKRQRQRQRHTKFINEISIEPCAAENDAVFSGKRVRRRSVVGKGRVAETPRGSTGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAALVYDNAAIKLRGPDALTNFITPPATWHNKDQTPVSNGYASVEETQNKNLFSPTSVLHSCSLSEEAESVTGKDDDYSSVSESSKAKAESPFPVPIPIPSELKFDFEDCLAAPDVYGELDGAAAAESVLFSDDDWPGVFLTACEDFGLKSWHADRNHDFFQDIDDLFVSDPLLAL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00216 322 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Vian10g00216 322 CDD AP2 111 168 IPR001471 GO:0003700|GO:0006355
Vian10g00216 322 MobiDBLite consensus disorder prediction 212 238 - -
Vian10g00216 322 FunFam Ethylene-responsive transcription factor 2 111 170 - -
Vian10g00216 322 SUPERFAMILY DNA-binding domain 112 168 IPR016177 GO:0003677
Vian10g00216 322 MobiDBLite consensus disorder prediction 40 64 - -
Vian10g00216 322 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Vian10g00216 322 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 235 - -
Vian10g00216 322 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Vian10g00216 322 Gene3D AP2/ERF domain 111 170 IPR036955 GO:0003700|GO:0006355
Vian10g00216 322 MobiDBLite consensus disorder prediction 215 229 - -
Vian10g00216 322 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Vian10g00216 322 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00216 Vian-Chr10 1902380 1903348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00216 1 213 AP2-EREBP Transcription Factor Family AT4G27950 46.696 3.68e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian10g00216 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00216 - - vra:106777252 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00216 10 1902380 1903348 Vian10g00216 10 1902380 1903348 ECH
Vian10g00216 10 1902380 1903348 Vian1g03887 1 62022387 62023319 PCT