Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00210 ATGGAAAGTGAAAAGAGTTGGGAGCAGAAAGCTCTCGTGAGTGAGCTAATTCAGGGGTTGCAGATAGCAATAAAGTTGAAGGAAAACTTCAATATACCCTCTTCGATTCACACTAGGGACTCACTACTGCAGAGTATATTGTCTTCTTACGACAAGGCTTTGCTTATTCTGAAACAAAATGCACCGTTTTCAAATTCAGAAACCATGCATCAACCAACTCAAACTTCCTCACCACAGTTTCCTCCCAAAGATCACTACGAAGGTGCCCTCAAGGATCATCAAGAACTTAAACAAAATTCAAAGAAAAGAAAGAAGATGCCCAAATGGACGGAACAGGTTAGAGTGAAGATCCAGAATGGGGTTGAAGAACCTCTGCAAGATGATTACAGCTGGAGAAAATATGGACAGAAAAACATCCTCAATGCAAAATATCCCAGAAGCTACTACAGGTGCACATTCCAAAAATCTAAGGGCTGCTTCGCCACCAAGCAAGTGCAGAGATCGGAAGAAGACACCAATGTCTTTGACATAAGTTACCGAGGAAGCCACGTCTGTTCTCAGGGAAACTATGCCGTTCTGCCATTAAAATTAGCAGACACAGAAGAGAAATCGCAAGGTTGTGACAGTGACGTTCAGTTTCATCATGCACAGTCATCGGGAGAAAGAGTTACAAACGACGCAAACACGTTGACTGTGGAAACGGATAACATGACGCCACATCCATTCCCTTCGTTTGGATGCATGCCACAAGATAACCACCACACGTTTCTTCCTTCCTTCGTACTGGAGAATGATCCCTTCTGCAGCACCATTTCCCAGACGTCCTTCTTCTCTCCGAACACACTTGAATCAAATTATCTTGTGTCTCCGTCTTTCCATTTACATGATGAATTCGACAGGGTCTTTGACAAGCCGTGCCCTGATTCTGATGCTGCCGGGATCGTTTTAGCTGATGCATCAACCATCAATTCTCCAAATTTTGACTTCAATTTCTCACTCGATGCAGTGGGAATTGGTGCAAATTGCCCTTCAATGCCTGGGGGTTCATCCTAA 1053 0.4378 MESEKSWEQKALVSELIQGLQIAIKLKENFNIPSSIHTRDSLLQSILSSYDKALLILKQNAPFSNSETMHQPTQTSSPQFPPKDHYEGALKDHQELKQNSKKRKKMPKWTEQVRVKIQNGVEEPLQDDYSWRKYGQKNILNAKYPRSYYRCTFQKSKGCFATKQVQRSEEDTNVFDISYRGSHVCSQGNYAVLPLKLADTEEKSQGCDSDVQFHHAQSSGERVTNDANTLTVETDNMTPHPFPSFGCMPQDNHHTFLPSFVLENDPFCSTISQTSFFSPNTLESNYLVSPSFHLHDEFDRVFDKPCPDSDAAGIVLADASTINSPNFDFNFSLDAVGIGANCPSMPGGSS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00210 350 MobiDBLite consensus disorder prediction 65 81 - -
Vian10g00210 350 MobiDBLite consensus disorder prediction 65 86 - -
Vian10g00210 350 Pfam WRKY DNA -binding domain 126 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g00210 350 Gene3D WRKY domain 110 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian10g00210 350 FunFam WRKY transcription factor 53 111 188 - -
Vian10g00210 350 ProSiteProfiles WRKY domain profile. 120 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g00210 350 SMART WRKY_cls 125 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g00210 350 SUPERFAMILY WRKY DNA-binding domain 124 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian10g00210 350 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 250 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00210 Vian-Chr10 1849563 1850783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00210 6 237 WRKY Transcription Factor Family AT4G23810 37.405 3.63e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian10g00210 WRKY 1.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00210 - - vun:114174666 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00210 10 1849563 1850783 Vian10g00210 10 1849563 1850783 ECH
Vian10g00210 10 1849563 1850783 Vian9g00557 9 6377674 6379678 ECH
Vian10g00210 10 1849563 1850783 Vian1g03899 1 62116745 62118061 PCT