Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00209 ATGTCAACCACCGCAACTACAACATCAGAAGAAGTTAGCAGCAACGAGTGGGAAGTGATACACATGAGCGAGCAAGAAGAGGATCTGATTCATAGGATGTACAAGCTGGTCGGAGACAAGTGGAATTTGATAGCGGGTCGCATTCCGGGTCGTAAAGCAGAAGAGATAGAGAGATTCTGGATTATGAGACACACTCACACTTTCTCTGTTACAAAAAATCAAAGTAAAGCCAAAGACTCTTGA 243 0.4362 MSTTATTTSEEVSSNEWEVIHMSEQEEDLIHRMYKLVGDKWNLIAGRIPGRKAEEIERFWIMRHTHTFSVTKNQSKAKDS 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00209 80 Pfam Myb-like DNA-binding domain 23 61 IPR001005 -
Vian10g00209 80 SUPERFAMILY Homeodomain-like 23 61 IPR009057 -
Vian10g00209 80 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 21 66 - -
Vian10g00209 80 CDD SANT 22 60 IPR001005 -
Vian10g00209 80 FunFam MYB-like transcription factor 21 63 - -
Vian10g00209 80 Gene3D - 22 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00209 Vian-Chr10 1840246 1842504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00209 22 60 MYB Transcription Factor Family AT5G52600 58.974 1.00e-12 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian10g00209 Myb_DNA-binding 4.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00209 K09422 - gmx:100814431 133.265