Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00204 ATGGATTCGACAGATAGCAGTGCGAACACAAAATCTAAAGAAATTGAACTGTGTTACGATGACTATCCCAAGAAGAGAAAGCGTCCTTCCCAAGTAGCGGTGGTTATTCCCACCATGGAAGAATCCAAGGCCGCCGCGTCCTCCTCCTCCTCCTCCGCAACGCACGGTTCCATATCCGTGATCGGGCGGCGACGCGCAATGGAGGACGCCGTCATGGTGTTTCCCGGCTTGGTGGCGGCGGGGCAGTGGTGTGGCGGTTATGATTTCTTCGCGGTTTACGACGGACACGGCGGGACGTTGGTGGCGAACGCTTGCCGCGACAGGCTACACCTGCTGTTGGCGGATGAAGTGAGGGAGAACGCGAAGGAGGGATTGGATTGGTACGAGGTTATGTGTTCGTGTTTCATGAAGATGGACAAGGAGATCGGAGTTGGTGGTAAGGCGAACGATGATGGTGGCGGAAACACCACAGGTTCAACGGCGGCGGTGGTTGTCGTTGGGAAGAAGGAGATTGTGGTGGCGAATTGCGGTGACTCGAGGTCGGTGTTGTGCCGTGGCGGTGTAGCCATAGCACTTTCGCGTGATCATAAGCCTGATCGTTCAGATGAAAGAGAGAGAATAGAAGCTGCTGGTGGAAGAGTGATTAACTGGAACGGAAGTCGTGTTTTGGGAGTTCTTGCAACTTCCAGATCCATAGGGGATCATTCGATGAAACCTTTTGTGATATCTGAGCCAGAGACGATGGTGTACGAGCGAACAGAGTGTGATGAGTTTGTGGTGGTAGCAAGCGATGGGTTATGGGATGTGGTGTCTAACAAGTTTGTTTGTGAGGTTGTACGAAGCTGCCTCCATGGCCAAATCAAGAGGAATTTAAAAGAGGAGACTGTTGTAAGCAATGCAACAGAAGCTGCATCTTTGTTGGCAGAGTTGGCCATGGCTCGTGGAAGCAAAGACAATATCAGTGTCATAGTCATCCAACTCAACAACACCATTTCATCCTGA 1002 0.516 MDSTDSSANTKSKEIELCYDDYPKKRKRPSQVAVVIPTMEESKAAASSSSSSATHGSISVIGRRRAMEDAVMVFPGLVAAGQWCGGYDFFAVYDGHGGTLVANACRDRLHLLLADEVRENAKEGLDWYEVMCSCFMKMDKEIGVGGKANDDGGGNTTGSTAAVVVVGKKEIVVANCGDSRSVLCRGGVAIALSRDHKPDRSDERERIEAAGGRVINWNGSRVLGVLATSRSIGDHSMKPFVISEPETMVYERTECDEFVVVASDGLWDVVSNKFVCEVVRSCLHGQIKRNLKEETVVSNATEAASLLAELAMARGSKDNISVIVIQLNNTISS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00204 333 Gene3D - 48 331 IPR036457 -
Vian10g00204 333 SUPERFAMILY PP2C-like 46 329 IPR036457 -
Vian10g00204 333 CDD PP2Cc 55 327 IPR001932 -
Vian10g00204 333 PANTHER PROTEIN PHOSPHATASE 45 326 IPR015655 GO:0004722|GO:0006470
Vian10g00204 333 SMART PP2C_4 41 325 IPR001932 -
Vian10g00204 333 Pfam Protein phosphatase 2C 59 320 IPR001932 -
Vian10g00204 333 FunFam Protein phosphatase 2C 51 47 333 - -
Vian10g00204 333 ProSitePatterns PPM-type phosphatase domain signature. 89 97 IPR000222 GO:0043169
Vian10g00204 333 ProSiteProfiles PPM-type phosphatase domain profile. 54 327 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00204 Vian-Chr10 1798220 1799648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00204 2 327 PP2C-type Phosphatase Gene Family AT2G29380 43.732 2.31e-85 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00204 K14497 - gmx:100813248 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00204 10 1798220 1799648 Vian10g00204 10 1798220 1799648 ECH