Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00178 ATGCAAGGTGGCGCAGCCGACGGAGAAGCCTTGGATTTCGAGCCCGAGGACGATGACTTGATGGACGAGGACGGCGCTCCCGACGCCGACGCTTCTCCGCCTCACCCTAAGCTTAAATCAGCCATCACCGCCGCAGCTACTTCCTCTCTCACCGCTCCCAAGAAGACCAAGGGTCGCGGTTTCCGTCAGGACACCGATGCCAACCGCAACACTCGACTCTCCGGCTCCGACTTCGACTCCCTCACCACCGAGGGTGGCCCTGGACCACAGAGATCCATTGAAGGATGGATCATTCTGGTGACCGGCGTGCACGAGGAAGCGCAAGAGGATGATTTGCAAAACGCCTTTGGTGAATACGGAGAGATTAAGAACCTGCATTTGAATCTCAATCGCCGCACTGGTTTTGTCAAAGGTTATGCATTGATTGAATACGAGCGTGCTGAAGAAGCTCGAAATGCAATAGAGAATTTGAATGGATCCGAGCTTCTTACCCAATCCATTTATGTTGACTGGGCCTTCAGCAGTGGACCTATTAATGAGTCAGTCAGAAGAAAGAATGCTAGAGCACCTCGTGAACGGCGCTCCAGGAGCCCCCGGAGGAGATATTGA 609 0.5386 MQGGAADGEALDFEPEDDDLMDEDGAPDADASPPHPKLKSAITAAATSSLTAPKKTKGRGFRQDTDANRNTRLSGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLNRRTGFVKGYALIEYERAEEARNAIENLNGSELLTQSIYVDWAFSSGPINESVRRKNARAPRERRSRSPRRRY 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00178 202 MobiDBLite consensus disorder prediction 67 87 - -
Vian10g00178 202 SMART rrm1_1 97 170 IPR000504 GO:0003723
Vian10g00178 202 PANTHER RNA-BINDING PROTEIN 8A 7 201 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vian10g00178 202 MobiDBLite consensus disorder prediction 10 26 - -
Vian10g00178 202 MobiDBLite consensus disorder prediction 182 202 - -
Vian10g00178 202 MobiDBLite consensus disorder prediction 188 202 - -
Vian10g00178 202 SUPERFAMILY RNA-binding domain, RBD 89 200 IPR035979 GO:0003676
Vian10g00178 202 Gene3D - 42 187 IPR012677 -
Vian10g00178 202 PRINTS RNA binding motif protein 8 family signature 87 101 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vian10g00178 202 PRINTS RNA binding motif protein 8 family signature 50 62 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vian10g00178 202 PRINTS RNA binding motif protein 8 family signature 161 173 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vian10g00178 202 PRINTS RNA binding motif protein 8 family signature 143 159 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vian10g00178 202 FunFam RNA-binding protein 8A-like 28 193 - -
Vian10g00178 202 MobiDBLite consensus disorder prediction 1 92 - -
Vian10g00178 202 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 165 IPR000504 GO:0003723
Vian10g00178 202 CDD RRM_RBM8 90 177 IPR033744 GO:0003729
Vian10g00178 202 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00178 98 172 Eukaryotic Initiation Factors Gene Family AT4G34110 36.000 3.81e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00178 K12876 - gmx:100527187 332.413