Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00175 ATGGGGTGCATCTGCTCAAAAGAAAACAAAGACAAAGTTGATGAGTATGAGAAAGAGAAAGAAAGAGAAAAAGAGTCGAACAAGTCTTCAGTGCAACTGGTTGCTCCTTCTGTCTCAACTGCACAGTCAGATAGTACTAGAGGCACGGATGGTTCGGTTCCCCTTATTGTTGACACATCAACACAAGCAATTAGAGGGTCTGTCGTAGTGACTGCAGAGGATAAAAGCAACCACTCAGATGCCACACAAGGCCAGCAGAAGAGGCGCGTGACAGTGAGTTGTGGTGTAGATGACAAAATGCCGATGATGAGCAGAATACTTAGCGTGCAGCATATTGCAGGAGAACAAGTTGATTCCGGATGGCCGATTTGGTTATCTTCAGTGGCAGCAGAAGCCATCAAAGGGTGGGTGCCTCGACGGGCAGACTCTTTTGAAAAATTAGGCCAAGTTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCGTGACCTTGAGACTGGTAAAATTGTGGCTTTGAAGAAGGTTCGGTTTTCAAGTGCAGATGTGGAAAGTGTTCGGTTCATGGCAAGAGAAATCTATATTATGCGTCAACTTGACCATCCCAATGTCATGAAGCTCGAGGGTCTTGTTACTTCAAGAACGTCCACCAGTTTGTACCTTGTTTTTGAATACATGGAACATGACCTCGCTGGGCTAGCAACTGTACATGGCTTGAAGTTAACTGAATCACAGATAAAATGTTTTCTGCAGCAACTGCTTCGTGGGCTTCAACATTGCCACAGTCGTGGTGTGCTGCACCGTGACATCAAGGGTTCAAATCTTCTTATTGACAACAATGGAAATCTTAAAATAGGAGATTTTGGTCTTGCAACAGTGTATGATCCTGAAAAAAAGCAGCCATTGACTAGCCGTGTTGTGACTCTGTGGTATAGAGCACCTGAGCTTTTGCTGGGTGCTACAGAGTATGGAGAAGCAATTGACTTGTGGAGTGTTGGTTGCATTCTAGCCGAATTGCTAGCGGGGAAGCCGATCATGCCTGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAACTTTGTGGTTCACCATCTGAAGACTATTGGCAGAGAACAAAATTTCCTCATGCAACAAGTTTTAAGCCACAACACCCTTACAACCGCCAAATTTCAGAAACATTTGAAAAATTTTCTTCTACGGCATTGGCTCTTGTTGATAAGCTTCTGACAATAGAACCAGAGGCTCGAGGATCAGCAACTTCCGCACTCGAGAGTGAGTTCTTCACTACAAACCCCTTACCTTGTGAACCCTCAAGTTTACCAAAGTTTTCACCAAGCAAGGAGTTTGATTCCAAGCGTCGACAAAAGGAAGCTACAAGGAAAAACCAGGAAGCTGTTAGAGGACGTGCACCAGCATCGGTTTTAAGAGGAGCAGGAGATACCAAGGCACTGGGTTCGCCACAGTATAACGCTCAGGGAAATATATCTATGCTGGAGAATAGGGAGGCCAAGGAGAACGGTGAAGGAGGCAGAGTAAGTGTACACGGTGGCTTCACGCATGCTGCTACAATGACGCGAGGCAGTGTAGCAGGATCATCCACATTGAGCAAGAGAGTAGAACCATCTTTGAAGAATCAGAGGTCTCATTTGAATCCTGCAACAGCAGATTTATGTACCTCTGCCCTCAAAAAGGAACCAGACTCGTCTGCTGTTGAATCCACCATGGGTTATATGCCGAAGAAAAATAGGATACACTACTCTGGACCATTGATGCCTCCGGGTGGGAACCTCGATGACATGCTTCGAGAGCATGAGAAATTGATGCAAGATGTTTTCCGTAGCGTCAAAAAGGCCAATCTGTAA 1863 0.4525 MGCICSKENKDKVDEYEKEKEREKESNKSSVQLVAPSVSTAQSDSTRGTDGSVPLIVDTSTQAIRGSVVVTAEDKSNHSDATQGQQKRRVTVSCGVDDKMPMMSRILSVQHIAGEQVDSGWPIWLSSVAAEAIKGWVPRRADSFEKLGQVGQGAYSSVHKARDLETGKIVALKKVRFSSADVESVRFMAREIYIMRQLDHPNVMKLEGLVTSRTSTSLYLVFEYMEHDLAGLATVHGLKLTESQIKCFLQQLLRGLQHCHSRGVLHRDIKGSNLLIDNNGNLKIGDFGLATVYDPEKKQPLTSRVVTLWYRAPELLLGATEYGEAIDLWSVGCILAELLAGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQRTKFPHATSFKPQHPYNRQISETFEKFSSTALALVDKLLTIEPEARGSATSALESEFFTTNPLPCEPSSLPKFSPSKEFDSKRRQKEATRKNQEAVRGRAPASVLRGAGDTKALGSPQYNAQGNISMLENREAKENGEGGRVSVHGGFTHAATMTRGSVAGSSTLSKRVEPSLKNQRSHLNPATADLCTSALKKEPDSSAVESTMGYMPKKNRIHYSGPLMPPGGNLDDMLREHEKLMQDVFRSVKKANL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00175 620 CDD STKc_CDK9_like 144 428 - -
Vian10g00175 620 FunFam probable serine/threonine-protein kinase At1g54610 227 468 - -
Vian10g00175 620 MobiDBLite consensus disorder prediction 430 489 - -
Vian10g00175 620 FunFam probable serine/threonine-protein kinase At1g54610 131 226 - -
Vian10g00175 620 MobiDBLite consensus disorder prediction 29 54 - -
Vian10g00175 620 Gene3D Phosphorylase Kinase; domain 1 131 226 - -
Vian10g00175 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Vian10g00175 620 SMART serkin_6 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00175 620 MobiDBLite consensus disorder prediction 525 548 - -
Vian10g00175 620 MobiDBLite consensus disorder prediction 446 464 - -
Vian10g00175 620 MobiDBLite consensus disorder prediction 1 54 - -
Vian10g00175 620 ProSiteProfiles Protein kinase domain profile. 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00175 620 Coils Coil 6 33 - -
Vian10g00175 620 Pfam Protein kinase domain 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00175 620 MobiDBLite consensus disorder prediction 7 28 - -
Vian10g00175 620 MobiDBLite consensus disorder prediction 523 548 - -
Vian10g00175 620 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Vian10g00175 620 PANTHER CELL DIVISION PROTEIN KINASE 142 434 - -
Vian10g00175 620 Gene3D Transferase(Phosphotransferase) domain 1 227 468 - -
Vian10g00175 620 MobiDBLite consensus disorder prediction 71 90 - -
Vian10g00175 620 SUPERFAMILY Protein kinase-like (PK-like) 137 435 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00175 Vian-Chr10 1517510 1521073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00175 136 467 Core Cell Cycle Gene Families AT5G10270 50.862 2.69e-118 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vian10g00175 Pkinase 2.2e-71 CL0016