Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00148 ATGGATGAGGGAAAGCATAAATCGAGGAAAGAAATTCACGAGTTGAAGGATGGAGATTCTAAGAGGAGTCACCGCGACCGTGACCGTGACCGTGATAGAACTGGAGAAAGGGGTAAGGATAAAAACGATGGGAGGCACAGGGATAGGGAGAAGAGGGATCGTGAGTCCCGAAGACATGAAAGAGAGAGGAGTACTGATTCTGAAGACAAGCATGATAGAGACAGGGAGAAACGAAAAGATAAAGATAAGGATGTGGATAGGGAAAGAGGTCGAGAGAAGAAAAGGGAAAGGGACAGGGACAGGGATGACAGGGAGAGGACAGACAGAGTAAGGGAAAAGGAGAAAGAGAGGGAAAAAAAAGAGGATAAGGAGAGGATCCGAGAGAGGGAAAGGAGGGATCATGAGAGAGAGAAAGAAAAGGAAAGAGAAAGGGTGAGGAGAGCACGAGAGAGGGAGAAGCGTAGAGAAGTTGATAGTGATTACAGTGATGGTGAATCTAGGGAGAGGGATAGAAAGCGGCACAAGAAAGAAGATGGTGATTACAAGAAGAGGGAGAGGGAAAGGAGTGTCAGCAAGCCAATCAGGCAATCCGAGGAACGTGAAGGGAGCCCAAGAAAAAAGAGTGTCGGAGATGATTCAGATACCAAAGATGGAGAGAAAAAACCTACCCGTGAAGAGGAGATGGAAAATGAACAAAAGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGAAGGAAGAAAGAGGAAGCAGAAAGAGAAAAGCATGGCGAAGTAAGTACTAATGAACCTGAGTCTGGAAAGACCTGGACACTAGAAGGGGAATCCGATGATGAAGAAGGACCGGGTACTGAGAAGCATGATACAGGTATGGATGTAGATGAAGATGTCGAACCTGCTGATACGGAACCTAAAGATGTGACGGTGGTAGACACTGATAATGGGACAATTGCATCTGATCTACAGGAGGGAACTGTTGGTACACCTGAAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAATGCTGTGACATCAGTAGTTTCTGATAAAGCCATTGACATAAAAGCCAAAGATAAAGGGAATGAGCAAAGTCGAGGTGCACAGTCGAGGAAAGGTTCAAATAAGTCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGCTGATGATGAAGTTGAGAGGGATCCATTGGATGAAGATGATGACGAGTTCATGAAAAGAGTGAAGAAAACAAAAGCTGAGAAGCTTTCTTTAGTTGACCATTCAAAGATTGACTATGAACCATTCAAGAAAACTTTTTATATTGAGGTGAAGGAGATCTCGAAGATTACTCCAGAAGAAGCTGCAGCATACAGGAAGCAGTTGGAATTGAAGATACATGGAAAGGATGTGCCAAAGCCAATAAGATCATGGCACCAGACTGGCCTTGCTAGCAAAATTTTGGAGACAATAAAGAAGATGAACTTTGACAAGCCTATGCCTATTCAAGCTCAGGCACTCCCTGTAATCATGAGCGGTCGAGATTGCATAGGGATTGCTAAAACTGGGTCAGGCAAAACACTTGCATTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCCGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGGGAACTTGTTCAACAGATTCACAGTGATATAAAAAAATTTGCGAAGGTGCTAGGTCTCAGGTGTGTGCCTGTGTATGGAGGCTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGAGGTGCTGAGATAGTTGTTTGTACGCCAGGTAGGATGATTGACATATTATGCACCAGTAGTGGAAAAATAACTAACTTGCGTAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTCGACATGGGCTTTGAACCTCAAATTACACGAATTGTTCAGAATATTCGTCCAGATCGTCAAACAGTTCTTTTCTCTGCTACATTCCCCCGTCAGGTTGAAATTCTGGCTCGTAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGCGGGAGGAGTGTAGTGAACAAAGACATATTACAGTTAGTTGAGGTGAGACCAGATAATGAAAGGTTCCTTAGACTCTTAGAATTATTAGGGGAATGGTACGAGAAAGGGAAGATCCTGATATTTGTTCACTCCCAGGAGAAATGTGATAGTCTGTTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCATGGGGCTAAGGACCAGACAGACCGAGAATCCACAATATCTGACTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGATGTTAAGGAGCTAGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACACCGTGTTGGGCGCACTGGACGAGCTGGCCGCAAGGGTTGTGCCATTACATTTATATCTGAGGAAGAGGCAAGATATGCACCTGATCTGTTGAAAGCCTTGGAATTATCTGAGCAGACTGTTCCCAATGATCTGAAAACTCTTGCTGATAGCTTTATGGTAAAGGTGAACCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGAAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTAAGGAGAGCAGCAAAGAAAGCACAAGCCAAGGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGAAGGTATTCGGAAGGCAGGAGGTGATATCTCACAGCATCCTGCTCTTGCACAGATTCTTGCCGCGACTAAAGTTAATGCTCCTGCATTGCCTACTCCCATCTCTGCTGCTCAGCTGATTTCGAATGGTGGACTACCTGTTTCTTTTCCGTCTGTTCTTGGTCTCCAGACCCCAACAGTCTTGCCTGGGACTGGGCTACCCCTTGCTGCAAATGATGGGGCAGCTCGAGCAGCACTAGCTGCGATGAACCTGCATCGCAACATAGAAAAAATACAGTCAGAAGCATTACCGGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTTACTCATAAGGAAACATTAGGTCCCATATCTGATTGGACAGGAGCTGCCATTACCACCAGGGGGCAGTTCTTCCCACCTGGAAAGATCCCAGGACCTGGAGAACGCAAACTCTACTTGTTCATTGAAGGTCCTACTGAGCAGTCTGTTAAGACAGCTAAAGCACAATTGAAACGTGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGAAATCAACCGGGCAAATACTCTGTTGTGTAA 3396 0.4441 MDEGKHKSRKEIHELKDGDSKRSHRDRDRDRDRTGERGKDKNDGRHRDREKRDRESRRHERERSTDSEDKHDRDREKRKDKDKDVDRERGREKKRERDRDRDDRERTDRVREKEKEREKKEDKERIRERERRDHEREKEKERERVRRAREREKRREVDSDYSDGESRERDRKRHKKEDGDYKKRERERSVSKPIRQSEEREGSPRKKSVGDDSDTKDGEKKPTREEEMENEQKRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEVSTNEPESGKTWTLEGESDDEEGPGTEKHDTGMDVDEDVEPADTEPKDVTVVDTDNGTIASDLQEGTVGTPEDEEIDPLDAFMNSMVLPEVEKLNNAVTSVVSDKAIDIKAKDKGNEQSRGAQSRKGSNKSIGRIIPGEESDSDYADDEVERDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKTFYIEVKEISKITPEEAAAYRKQLELKIHGKDVPKPIRSWHQTGLASKILETIKKMNFDKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDILQLVEVRPDNERFLRLLELLGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQTVPNDLKTLADSFMVKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKVNAPALPTPISAAQLISNGGLPVSFPSVLGLQTPTVLPGTGLPLAANDGAARAALAAMNLHRNIEKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEQSVKTAKAQLKRVLEDITNQALQLPGGNQPGKYSVV 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00148 1131 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 648 656 IPR000629 -
Vian10g00148 1131 MobiDBLite consensus disorder prediction 909 923 - -
Vian10g00148 1131 MobiDBLite consensus disorder prediction 1 270 - -
Vian10g00148 1131 Pfam DEAD/DEAH box helicase 518 689 IPR011545 GO:0003676|GO:0005524
Vian10g00148 1131 Gene3D - 445 702 IPR027417 -
Vian10g00148 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 704 IPR027417 -
Vian10g00148 1131 CDD KH-I_AtRH42_like 1029 1130 - -
Vian10g00148 1131 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 493 521 IPR014014 GO:0003724
Vian10g00148 1131 MobiDBLite consensus disorder prediction 408 423 - -
Vian10g00148 1131 MobiDBLite consensus disorder prediction 278 301 - -
Vian10g00148 1131 Coils Coil 225 262 - -
Vian10g00148 1131 CDD SF2_C_DEAD 714 844 - -
Vian10g00148 1131 PANTHER RNA HELICASE 436 913 - -
Vian10g00148 1131 FunFam probable ATP-dependent RNA helicase DDX17 455 705 - -
Vian10g00148 1131 Coils Coil 110 155 - -
Vian10g00148 1131 SMART ultradead3 512 717 IPR014001 -
Vian10g00148 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 874 IPR027417 -
Vian10g00148 1131 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 524 702 IPR014001 -
Vian10g00148 1131 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 730 874 IPR001650 -
Vian10g00148 1131 MobiDBLite consensus disorder prediction 372 386 - -
Vian10g00148 1131 CDD DEADc_DDX46 482 703 - -
Vian10g00148 1131 MobiDBLite consensus disorder prediction 909 940 - -
Vian10g00148 1131 Gene3D - 703 878 IPR027417 -
Vian10g00148 1131 MobiDBLite consensus disorder prediction 1 341 - -
Vian10g00148 1131 SMART helicmild6 754 835 IPR001650 -
Vian10g00148 1131 MobiDBLite consensus disorder prediction 371 427 - -
Vian10g00148 1131 Pfam Helicase conserved C-terminal domain 727 835 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00148 Vian-Chr10 1313059 1316454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00148 480 855 Eukaryotic Initiation Factors Gene Family AT3G19760 31.842 9.39e-57 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00148 K12811 - gmx:100784306 1693.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00148 10 1313059 1316454 Vian10g00148 10 1313059 1316454 ECH