Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00137 ATGAAGCTGAAAACTTACGCTGGTCTTAGTTTCATTGCAACTCTGGCTATTATATATCATGCATTTAACAGTAGGGGTCAATTTTATCCGGCAATGGTGTATCTCTCAACTTCCAAGATCAGCTTGGTGCTTCTTCTCAACATGGGTTTGGTCTTTATGTGTATTCTATGGCAATTAACCAAGAAGATTTTCTTGGGTTCCCTCCGTGAGGCGGAGGTTGAGAGGCTAAACGAGCAATCGTGGAGGGAAGTCATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAAGACTTCTCTGTCACATTTCTTGCGATGGTCACGGCATTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTCGAGTACATCGAGACCACTCCTTCGGTGCCCATGTTGTCGCATGTTCGAATTGTATCTTTTATGGGGTTCCTTCTTCTCTTAGACAGCCTTTTCTTATATAGTTCTTTGAAGCATCTGATAGAAACCTGGCAGGCTTCAGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCAACCACCACCGTGTCAATTTTTGTAAAGTATATTTTCTATGTTAGTGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTCTTCACTTTTTACCTGGAACTCATTAGGGACTTGCTTCACTTAAACTATGGTATTCCCTTGCACCTTATACGGGAGCTGTATGAGACGTTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGTTATCGTAAAATCACTTCAAATATGAATGATCGATTTCCAGATGCAACCCCTGAGGAGCTTAATGCAAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGTGGACATCTTTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCATACATGCCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGAACAACTGCAGCTGTAGGGCCGCAAGGATCACAGGCTGATGGTCAACGGCAAGGAGCTGGGACAGGCGGTGAAAGCTCAGCTCAAAATGAGGCTACGGATAATTTGAGTAGACATCGAGCCAGACTCCAAGCTGCTGCTTCTGCTGCTTCCATATATGAGAAGTCTTATGTGTACCCTTCTGCAAATTCTTTTGCATGTTCTCCTGGGTACACTCTCCATCCTCCGGTGGCTGAATCTACTAATAAAGACAGTAGTGGAGGGCAGACTTCCGGCGAACAAACACAAAGTTGGTTTCTTACCACTGGTGGACCAACAAATGAATCTTATCCTCCAATGCAATACTTCCATCTTCTACCCTCCCAACCAAATGCAGCCCTTGTCAATTATGGAAAGGGGTTTGAAAATGATCCAAATATCCCAAGCTCCCATCTGGAAGCATATAGAAAACTCCTTCAATGCCAGATTCAGATTCTGCAAAATCAGCTCGAGATTCTGCAGAAGACAAGGTCTGACAGAAGTGTAGATGAGGGCACATCGTCATCAGATAGCAGAGGCAAGAGTGTCATTTCCTCATCTGAATCTGGACGTGCTTATACTGAGGAGATTCAAGATGGAAAAGCATATAGGAAGAAGAGAACACAGAAATCACAGCATGGCTCTAACGTGAAATCTGCTATTGATACTAATCTTGTAAATGCTTAG 1680 0.4345 MKLKTYAGLSFIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLTKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSLFLYSSLKHLIETWQASVSLFFCFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAAVGPQGSQADGQRQGAGTGGESSAQNEATDNLSRHRARLQAAASAASIYEKSYVYPSANSFACSPGYTLHPPVAESTNKDSSGGQTSGEQTQSWFLTTGGPTNESYPPMQYFHLLPSQPNAALVNYGKGFENDPNIPSSHLEAYRKLLQCQIQILQNQLEILQKTRSDRSVDEGTSSSDSRGKSVISSSESGRAYTEEIQDGKAYRKKRTQKSQHGSNVKSAIDTNLVNA 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00137 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 324 IPR013083 -
Vian10g00137 559 MobiDBLite consensus disorder prediction 329 359 - -
Vian10g00137 559 MobiDBLite consensus disorder prediction 327 363 - -
Vian10g00137 559 Coils Coil 474 494 - -
Vian10g00137 559 MobiDBLite consensus disorder prediction 494 559 - -
Vian10g00137 559 MobiDBLite consensus disorder prediction 506 524 - -
Vian10g00137 559 MobiDBLite consensus disorder prediction 403 431 - -
Vian10g00137 559 MobiDBLite consensus disorder prediction 402 431 - -
Vian10g00137 559 SMART ring_2 279 316 IPR001841 -
Vian10g00137 559 MobiDBLite consensus disorder prediction 544 559 - -
Vian10g00137 559 CDD RING-H2_synoviolin 276 317 - -
Vian10g00137 559 SUPERFAMILY RING/U-box 259 323 - -
Vian10g00137 559 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 251 326 - -
Vian10g00137 559 Pfam Ring finger domain 278 317 IPR001841 -
Vian10g00137 559 ProSiteProfiles Zinc finger RING-type profile. 279 317 IPR001841 -
Vian10g00137 559 PANTHER RING ZINC FINGER PROTEIN 1 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00137 Vian-Chr10 1153148 1158130 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00137 1 519 C3H Transcription Factor Family AT3G16090 63.265 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00137 K10601 - gmx:100816441 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00137 10 1153148 1158130 Vian10g00137 10 1153148 1158130 ECH