Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00131 ATGTTAAGTGTAGCTCCTTCTGTTGATACCAATACTACCAAAGAGATGCCTGCAGCAAAAACAGAGCAGAACCAAATTCCTCAGACTACCCATGTATTCAAATCAAAATTACCAGACATACCAATCTCCAACCACATGCCCCTCCATGCCTACTGCTTCCAAAACCTCTCCAAATTCGCCGACCGTCCTTGCCTCATCGTCGGCTCCGCCGCCAAAACCTACACTTACGCAGAGACTCACCTTATATCACGCAAGATTGCAGCCGGATTCTCGAACCTCGGCATCCGAAAGGGCGACGTCGTCATGATCCTCCTCCAGAACTCCGCCGAGTTCGTCCTCTCCTTCCTCGCCGCCTCCATGATCGGTGCCGTTGCCACCACCGCCAACCCGTTCTACACCGCCGCCGAGATCTTCAAGCAGTTCAGCGCCTCCAAGGCGAAGCTCATCATAACTCAGGCAATGTACGTTGACAAGCTCCGCAACCACGACGGCGGATGGAGCCTCGGCGAGGACTTCAAGGTCGTGACCGTGGACGATCCGCCGGAGAATTGCCTCCACTTCTCGGTACTCTCGGAGGCGAACGAGAACGACGTTCCGGAGGTGGAGATCCATCCGGACGATGCGGTGGCGCTTCCGTTCTCCTCCGGCACCACGGGGTTACCGAAAGGAGTGATTCTGACTCACAAGAGTTTAACCACGAGCGTGGCGCAACAGGTGGACGGGGAGAACCCTAACCTCTACCTCACTACCGAGGACGTACTCCTCTGCGTGCTCCCGCTCTTTCACATATTCTCGCTCAACAGTGTGCTGTTATGCGCGCTGAGAGCCGGGAGTGGCGTTTTGCTGATGCAGAAGTTCGAGATTGGGACGCTGCTGGAGCTCATACAGCGCTACCGCGTGTCGGTGGCCATGGTGGTGCCTCCCTTGGTGCTGGCGCTGGCAAAGAATCCGATGGTCGCGAATTTTGATCTCAGTTCAATACGGTTAGTTCTCTCCGGTGCCGCTCCCTTGGGTAAGGAGCTCGAAGACGCCCTCCACAGCAGGGTGCCTCACGCTGTTTTGGGACAGGTAACTAATTACCGGTTACGGGATGACAGAAGCAGGGCCAGTCCTTTCCATGTGCTTGGGCTTTGCAAAACAACCATTCCCAACAAAATCGGGATCTTGTGGAACCGTTGTCAGAAATGCAGAGCTAAAGGATATCTGAACGACGACCAAGCGACGGCATCGACCATCGACGCAGAGGGTTGGCTTCACACCGGTGATGTTGGCTATGTAGATGATGATGACGAAATTTTCATTGTTGACAGGGTGAAAGAACTCATTAAGTTTAAAGGCTTCCAGGTGCCCCCTGCAGAACTCGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAGACGCCGCAGTTGTCCCACAAAAGGATGTTGTTGCCGGTGAACTTCCCGTTGCTTTCGTTGTCAGATCTAACGGCTTTGATCTAACAGAAGAGGCTGTGAAAGAGTATATAGCTAAACAGGTGGTGTTTTACAAAAGACTGCACAAAGTTTATTTTGTTCATGCTATTCCCAAGTCTCCGTCGGGGAAGATATTAAGGAAAGATCTGAGAGCAAAGCTTGAAGCAGCCGCCGCCGCCGCCGTCACTCCGACGCCTTAA 1653 0.5336 MLSVAPSVDTNTTKEMPAAKTEQNQIPQTTHVFKSKLPDIPISNHMPLHAYCFQNLSKFADRPCLIVGSAAKTYTYAETHLISRKIAAGFSNLGIRKGDVVMILLQNSAEFVLSFLAASMIGAVATTANPFYTAAEIFKQFSASKAKLIITQAMYVDKLRNHDGGWSLGEDFKVVTVDDPPENCLHFSVLSEANENDVPEVEIHPDDAVALPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSGVLLMQKFEIGTLLELIQRYRVSVAMVVPPLVLALAKNPMVANFDLSSIRLVLSGAAPLGKELEDALHSRVPHAVLGQVTNYRLRDDRSRASPFHVLGLCKTTIPNKIGILWNRCQKCRAKGYLNDDQATASTIDAEGWLHTGDVGYVDDDDEIFIVDRVKELIKFKGFQVPPAELEGLLVSHPSIADAAVVPQKDVVAGELPVAFVVRSNGFDLTEEAVKEYIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLEAAAAAAVTPTP 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00131 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 29 536 - -
Vian10g00131 550 SUPERFAMILY Acetyl-CoA synthetase-like 43 540 - -
Vian10g00131 550 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Vian10g00131 550 Gene3D - 439 543 IPR045851 -
Vian10g00131 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 34 358 - -
Vian10g00131 550 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Vian10g00131 550 ProSitePatterns Putative AMP-binding domain signature. 211 222 IPR020845 -
Vian10g00131 550 Pfam AMP-binding enzyme 55 444 IPR000873 -
Vian10g00131 550 Gene3D - 23 438 IPR042099 -
Vian10g00131 550 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00131 Vian-Chr10 1116219 1119177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00131 27 451 Monolignol Biosynthesis Gene Families AT1G65060 60.394 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00131 K01904 - gmx:547492 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00131 10 1116219 1119177 Vian10g00131 10 1116219 1119177 ECH