Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00125 ATGGAGGGAGCATCGTGGAACAGCAGTGTTTGTGTGGCACCGTTTCTGAGCAAAACCTACGACATGGTAGACGACCCCTCCACCGATTCCGTCGTGTCGTGGGGCGAACACAACAACACCTTTGTTGTCTGGAACGTTCCCCAGTTTGCCACAGACATCTTGCCCAAACATTTTAAGCATAACAACTTCTCCAGCTTCGTCAGACAGTTGAATACTTATGTGGGCATCGCTTCACTTTTCCTCCGATTATTCTTGTCAGTATTACACCTTCATTGGGGTTTTAAGAAGGTTGATCCAGATCAATGGGAATTTGCAAATGAAGGATTTTTAAGAGGGGAAAAACAACTTCTAAAAAGTATTAGTAGGCGTAAATCTGCCCATATAAATGGTAGTCAGCAACCATCTCAAGTGCAAAAATCAGCTGTTAGAGCATGTGTCGAGGTGGGAAAATTTGGGATTGAGGAAGAGGTGGAAATACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTAGTTAGGTTGAGACAGAAACAGCAAGTGACTGATAACCAGTTGCAAAATGTTGGGCAACGCGTGCAGTCAATGGAGCAGCGCCAGCAGCAAATGATGTCATTCCTAGCAAAGGCCATGCACAGCCCTGGCTTCTTAGCTCAATTTGTACAGCAGCAGAATGAAAGTAAGAAACATATCACCGGGGCTAATAAAAAGAGGAGGCTCCACAGTCAGGAGAAGGATAATTTAACCACCAACAGTCTCCATAGTGGTCTTGATGGACACGTAGTCAAGTACCAGAGTTCCATAAACAATGCTGCAAAATCATTATTTCGCCAGATATTGCAGATAAACAATTCTACCGCAACCCAATCATCAATTAAGAACCCTGATGTTTTTCTCATTGACGATATCCCTTCTACCATTGCATCAGATAGCAGCAGTTCATCCACTCAGGTTTCTAATGTGACCCTTTCTACTGTTCCTCCTGTTTCTGAACTAACAAGTATGGAAGTAGACTCCCAGTTTCCCGTCAATTGTATGCCCAGTATATCCGAGGTGCAATCTTCACCTGCTGTCTTGGGCTTTTGTCAGAGTCAAGGGGTGGAAGCTGCAAGCAGTTTATTGAATCATAATCTGAATGGTGTGGAGGGGAACATGGCGGAGATAGATGTGTCATCTGTTTTGGATGGACCGCACACTGTAGAAGCTGGTTATTCTTCACCCGATGCAGATGGAATTTCCCAACTCCCTGATATCGATGATGAGTTCTGGGAGTTGTTTTTCAGGCCAAGCCCACTTACAGGAGACGCAGAGGAAATTAAATTTAGCACTCTAGGATGTGGTCTGACTGAAGACCAGGGTTTGCCTTTGGAAAGGGAAAATGAGAAGAAAAATGTTGATAAGATGCAGCATGTTGACAATCTTACTAAACAGATGGGACTTCTTGCATCAAAGTCCTAA 1455 0.4378 MEGASWNSSVCVAPFLSKTYDMVDDPSTDSVVSWGEHNNTFVVWNVPQFATDILPKHFKHNNFSSFVRQLNTYVGIASLFLRLFLSVLHLHWGFKKVDPDQWEFANEGFLRGEKQLLKSISRRKSAHINGSQQPSQVQKSAVRACVEVGKFGIEEEVEILKRDKNVLMQELVRLRQKQQVTDNQLQNVGQRVQSMEQRQQQMMSFLAKAMHSPGFLAQFVQQQNESKKHITGANKKRRLHSQEKDNLTTNSLHSGLDGHVVKYQSSINNAAKSLFRQILQINNSTATQSSIKNPDVFLIDDIPSTIASDSSSSSTQVSNVTLSTVPPVSELTSMEVDSQFPVNCMPSISEVQSSPAVLGFCQSQGVEAASSLLNHNLNGVEGNMAEIDVSSVLDGPHTVEAGYSSPDADGISQLPDIDDEFWELFFRPSPLTGDAEEIKFSTLGCGLTEDQGLPLERENEKKNVDKMQHVDNLTKQMGLLASKS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00125 484 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00125 484 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00125 484 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00125 484 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 315 IPR027725 -
Vian10g00125 484 SMART hsfneu3 11 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00125 484 Pfam HSF-type DNA-binding 15 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00125 484 Coils Coil 157 177 - -
Vian10g00125 484 FunFam Heat shock transcription factor 1 8 124 - -
Vian10g00125 484 SUPERFAMILY "Winged helix" DNA-binding domain 12 123 IPR036390 -
Vian10g00125 484 Gene3D - 8 124 IPR036388 -
Vian10g00125 484 MobiDBLite consensus disorder prediction 226 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00125 Vian-Chr10 1062438 1065152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00125 12 484 HSF AT5G16820 49.795 1.86e-134 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian10g00125 HSF_DNA-bind 2.3e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00125 K09419 - gmx:100793665 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00125 10 1062438 1065152 Vian10g00125 10 1062438 1065152 ECH
Vian10g00125 10 1062438 1065152 Vian3g00549 3 5465651 5467209 PCT