Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00109 ATGAGTACTGCCGGGTGGTCAGATGAGGAACGCTCTGTCATTGGAGATACGGCTGAAATTGGGTTTCTAGATTTTGAGGAAGAGAAATCTGTTTGCAGTTACTTTGATTATGAAGGGGTTCCAGTTGTTGTATCTGCCCCATTTCCATTTGTGGAAGGCAAGCCTCAATCTGTATTTATAGGGGACACTGCTGTGGATTTAATAACCATTAGGAATACTACTGATGAACCAGTGGACCTGTGGAGTGTTCATATTTTTGCCTCAAATCCTACGGACAGTTTCACTCTCTCTCTTACAGAACCTCTACCGGAAAATTCAAATGCAGAAGGAGAACAGAGCTGCTTAGAATCTTTCTCTTTGGAGGACAGGGTGCTTCAACCTCGTGAAAACTTGAAAGTATGGCTGTCTTGCAAGACAAAAGAAATTGGCATGTGTTCATCAGTCATATATTTTGATGCTGGAGATGAAAAAATTGAAAGGGTGGTTTTCCTCTTAGTTGAAGACAAAATCTCCAAGTCTTTGGCTTCTAAGAGGCCCTATTCAAGAGCAAAGAAAAAGGACAAATTTGTTGTGGATAATTATGTTCCAGGTTCACGTCCTGCAGGGAAGCCAACTCGAAGATACATAAATAGGCTTCCGAAATATCACATTCCCAGGGACATGAGAGAGTTGCTTGAGAATAATCAGATCCCTCAAGTTGTTGAAGAAGGTCTTACTAGAAGGACTTATTCATCTTATTTCAAAACATTAATAATAATGGAAGAGATCCAGTTGGAGGAAGACATGAGGATTTATGATATGGAATCTATATCGATGAGAAAGAGGAACAATCGATTTTTGTCTATGGAGGTTCCTGGGCTTGCTGAGAGAAGACCATCTCTGGTTCATGGGGATTATATATTTGTTAAGCTCGCATATGATAATAGCAACAGACAGCCTTATCAGGGCTTTATCCACCGAGTTGAAGCTGATGAAATTTATTTGAAGTTTGATCCTGAATTTCACTTTTACCACAAGGACGAAAATACATATGATGTTCACTTCACCTATAACAGGATCAATATGAGAAGGCTATATCAAGCAGCTGAGGCAGCAGAAAACTTGGGTACCGACATCCTCTTTCCATCTACATCAATAAAGAGACACATTAAAACTGCTGCTCTAGTACCCATATCTGGTACTTTTAACGAGGAGCAAATTTGTTCAATCAAAATGATTCTTGGTTGCAAAGGTGCACCACCTTATTTGATTCATGGACCCCCTGGTACGGGAAAGACAAGGACAATAGTAGAAGCAATCCTGCAGCTCTACAAATATCACAAGAATGCTCGGATTCTTGTGTGTGCACCCTCAAATAGTGCAGCAGACTACATACTGGAGAGACTCCTTACTCAACAGGACATTGAGTTGCGAGAAAATGAAATATTCAGGCTCAATGCATCTACTAGGCCATACGAAGATGTTAAACCTGAAATTATCCGCTTCTGCTTCTTTGATGATATGGTATTTAAGTGTCCCCCAGTGAACGCCCTCAGTTATTATAAGATCATAATATCCACATATATGAGTGCGTCTCTTCTTTATGCTGAAGATCTTGCCCGTGGTCACTTTTCCCATATTTTTTTGGACGAGGCTGGCCAAGCTTCTGAACCTGAAACCTTGATCCCTGTATCCCACCTCTGCACAATGAAAACTGTTGTTGTTCTGGCTGGAGACCAATTGCAATTGGGTCCAGTAATATATTCCAAGAAAGCAGATGAGTTTGGTTTGGGGGTTTCATATATGGAACGATTGTCTCAACTCCAGCTATATGCCAGTGGAGATACTAACTATGTAACACGATTGATTCGGAACTATCGATGTCACCCAGCAATATTGCATCTTCCTTCAAAGTTGTTCTATTATGGGGAATTGCTTGCTTGTAGAGATTCCACAACTTTCCTGACGATGGGGGAGTTGCTACCTAATAAGGAATTTCCTATTCTTTTCTATGGCATCCAAGGATGCGATGAAAGAGAAGGAAATAACCCATCGTGGTTTAACCGCATTGAAGTCAGTAAGGTTATAGAACTTGTCAGTAGACTGATTGCAGGAGGGAACATAAAGGAGAAAAACATTGGCATAATAACTCCATATAGGCAACAAGTGTCAAAAATAAAACAGACACTTGAAAATCTAGATATGCCTGACATCAAAGTGGGTAGTGTCGAGCAATTCCAAGGACAAGAGATGGAGGTTATTATCATATCAACAGTTCGATCAACTATCAAACATAACGAGTTTGACAGAGTCCACTGTCTTGGCTTTTTGAGCAATTATAGAAGGTTTAACGTGGCTATAACTCGTGCTATATCATTGCTGGTTATAATTGGGAATCCGCATATAATCTGCAAGGATGACTATTGGAGCCAAATGTTGTGGTACTGTGTGGACAATTCATCTTACCAGGGTTGTTCTCTTCCTGAGAGGGTGGAACCTTATGACGATGAAGACGCTGAAGAGAACCCATACTCGACTGAAGATAATGCGTGGCCCTCAAATAACGCAGAATGGGGTCAAGATTCATCAAACAATGCAGAATGGGGTCAAGATTCATCAAACAATGCAGAATGCGGTCAAGATTCATCAAACAATGCAGAATGGGGCCAAGATTCTTCCCAGATAGGGCTCCCTAAACCTGTTACCAATGAAGCTGAGTGGTCTGATGGCTGGAGAAGTAATTAA 2724 0.4086 MSTAGWSDEERSVIGDTAEIGFLDFEEEKSVCSYFDYEGVPVVVSAPFPFVEGKPQSVFIGDTAVDLITIRNTTDEPVDLWSVHIFASNPTDSFTLSLTEPLPENSNAEGEQSCLESFSLEDRVLQPRENLKVWLSCKTKEIGMCSSVIYFDAGDEKIERVVFLLVEDKISKSLASKRPYSRAKKKDKFVVDNYVPGSRPAGKPTRRYINRLPKYHIPRDMRELLENNQIPQVVEEGLTRRTYSSYFKTLIIMEEIQLEEDMRIYDMESISMRKRNNRFLSMEVPGLAERRPSLVHGDYIFVKLAYDNSNRQPYQGFIHRVEADEIYLKFDPEFHFYHKDENTYDVHFTYNRINMRRLYQAAEAAENLGTDILFPSTSIKRHIKTAALVPISGTFNEEQICSIKMILGCKGAPPYLIHGPPGTGKTRTIVEAILQLYKYHKNARILVCAPSNSAADYILERLLTQQDIELRENEIFRLNASTRPYEDVKPEIIRFCFFDDMVFKCPPVNALSYYKIIISTYMSASLLYAEDLARGHFSHIFLDEAGQASEPETLIPVSHLCTMKTVVVLAGDQLQLGPVIYSKKADEFGLGVSYMERLSQLQLYASGDTNYVTRLIRNYRCHPAILHLPSKLFYYGELLACRDSTTFLTMGELLPNKEFPILFYGIQGCDEREGNNPSWFNRIEVSKVIELVSRLIAGGNIKEKNIGIITPYRQQVSKIKQTLENLDMPDIKVGSVEQFQGQEMEVIIISTVRSTIKHNEFDRVHCLGFLSNYRRFNVAITRAISLLVIIGNPHIICKDDYWSQMLWYCVDNSSYQGCSLPERVEPYDDEDAEENPYSTEDNAWPSNNAEWGQDSSNNAEWGQDSSNNAECGQDSSNNAEWGQDSSQIGLPKPVTNEAEWSDGWRSN 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00109 907 PANTHER CANCER/TESTIS ANTIGEN 55 118 381 - -
Vian10g00109 907 MobiDBLite consensus disorder prediction 839 892 - -
Vian10g00109 907 Pfam AAA domain 395 490 IPR041677 GO:0004386
Vian10g00109 907 Pfam AAA domain 511 583 IPR041677 GO:0004386
Vian10g00109 907 FunFam Probable RNA helicase SDE3 345 489 - -
Vian10g00109 907 FunFam Probable RNA helicase SDE3 620 818 - -
Vian10g00109 907 Gene3D - 317 606 IPR027417 -
Vian10g00109 907 CDD DEXXQc_Helz-like 396 620 IPR026122 GO:0003723|GO:0032574
Vian10g00109 907 Gene3D - 620 820 IPR027417 -
Vian10g00109 907 MobiDBLite consensus disorder prediction 828 907 - -
Vian10g00109 907 Pfam AAA domain 591 793 IPR041679 -
Vian10g00109 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 804 IPR027417 -
Vian10g00109 907 CDD SF1_C_Upf1 621 809 IPR047187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00109 Vian-Chr10 944737 948779 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00109 333 551 Core DNA Replication Machinery Family AT1G08840 26.549 2.53e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00109 K18422 - gmx:100801796 1533.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00109 10 944737 948779 Vian10g00109 10 944737 948779 ECH